Rxivist logo

Mitochondrial DNA Copy Number Variation Across Human Cancers

By Ed Reznik, Martin L. Miller, Yasin Senbabaoglu, Nadeem Riaz, William Lee, Chris Sander

Posted 27 Jun 2015
bioRxiv DOI: 10.1101/021535 (published DOI: 10.7554/eLife.10769)

In cancer, mitochondrial dysfunction, through mutations, deletions, and changes in copy number of mitochondrial DNA (mtDNA), contributes to the malignant transformation and progression of tumors. Here, we report the first large-scale survey of mtDNA copy number variation across 21 distinct solid tumor types, examining over 13,000 tissue samples profiled with next-generation sequencing methods. We find a tendency for cancers, especially of the bladder and kidney, to be significantly depleted of mtDNA, relative to matched normal tissue. We show that mtDNA copy number is correlated to the expression of mitochondrially-localized metabolic pathways, suggesting that mtDNA copy number variation reflect gross changes in mitochondrial metabolic activity. Finally, we identify a subset of tumor-type-specific somatic alterations, including IDH1 and NF1 mutations in gliomas, whose incidence is strongly correlated to mtDNA copy number. Our findings suggest that modulation of mtDNA copy number may play a role in the pathology of cancer.

Download data

  • Downloaded 4,755 times
  • Download rankings, all-time:
    • Site-wide: 820 out of 89,390
    • In genomics: 172 out of 5,699
  • Year to date:
    • Site-wide: 7,701 out of 89,390
  • Since beginning of last month:
    • Site-wide: 12,994 out of 89,390

Altmetric data


Downloads over time

Distribution of downloads per paper, site-wide


PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News