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Reliable identification of protein-protein interactions by crosslinking mass spectrometry

By Swantje Lenz, Ludwig R Sinn, Francis J. O’Reilly, Lutz Fischer, Fritz Wegner, Juri Rappsilber

Posted 25 May 2020
bioRxiv DOI: 10.1101/2020.05.25.114256

Crosslinking mass spectrometry is widening its scope from structural analyzes of purified multi-protein complexes towards systems-wide analyzes of protein-protein interactions. Assessing the error in these large datasets is currently a challenge. Using a controlled large-scale analysis of Escherichia coli cell lysate, we demonstrate a reliable false-discovery rate estimation procedure for protein-protein interactions identified by crosslinking mass spectrometry. ### Competing Interest Statement The authors have declared no competing interest.

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