Rxivist logo

Local computational methods to improve the interpretability and analysis of cryo-EM maps

By S. Kaur, J Gomez-Blanco, A. Khalifa, S. Adinarayanan, Ruben Sanchez-Garcia, Daniel Wrapp, Jason S McLellan, Khanh Huy Bui, J Vargas

Posted 12 May 2020
bioRxiv DOI: 10.1101/2020.05.11.088013

Cryo-electron microscopy (cryo-EM) maps usually show heterogeneous distributions of B-factors and electron density occupancies and are typically B-factor sharpened to improve their contrast and interpretability at high-resolutions. However, 'over-sharpening' due to the application of a single global B-factor can distort processed maps causing connected densities to appear broken and disconnected. This issue limits the interpretability of cryo-EM maps, i.e. ab initio modelling. In this work, we propose 1) approaches to enhance high-resolution features of cryo-EM maps, while preventing map distortions and 2) methods to obtain local B-factors and electron density occupancy maps. These algorithms have as common link the use of the spiral phase transformation and are called LocSpiral, LocBSharpen, LocBFactor and LocOccupancy. Our results, which include improved maps of recent SARS-CoV-2 structures, show that our methods can improve the interpretability and analysis of obtained reconstructions. ### Competing Interest Statement The authors have declared no competing interest.

Download data

  • Downloaded 1,019 times
  • Download rankings, all-time:
    • Site-wide: 20,290
    • In biophysics: 540
  • Year to date:
    • Site-wide: 21,286
  • Since beginning of last month:
    • Site-wide: 20,637

Altmetric data


Downloads over time

Distribution of downloads per paper, site-wide


PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News