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ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies

By Anna Pamela Calinawan, Xiaoyu Song, Jiayi Ji, Saravana Mohan Dhanasekaran, Francesca Petralia, Pei Wang, Boris Reva

Posted 07 Feb 2020
bioRxiv DOI: 10.1101/2020.02.05.935650 (published DOI: 10.1002/pmic.201900359)

The Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative has generated extensive multi-omics data resources of deep proteogenomic profiles for multiple cancer types. To enable the broader community of biological and medical researchers to intuitively query, explore, and download data and analysis results from various CPTAC projects, we built a prototype user-friendly web application called 'ProTrack' with the CPTAC clear cell renal cell carcinoma (ccRCC) data set (http://ccrcc.cptac-data-view.org). Here we describe the salient features of this application which provides a dynamic, comprehensive, and granular visualization of the rich proteogenomic data.

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