Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,351 bioRxiv papers from 296,699 authors.
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data
Jonathan Y Hsu,
Giosuè Lo Bosco,
Alexander N. Gorban,
Daniel E. Bauer,
David M. Langenau,
Jason Daniel Buenrostro,
Posted 18 Apr 2018
bioRxiv DOI: 10.1101/302554 (published DOI: 10.1038/s41467-019-09670-4)
Posted 18 Apr 2018
Single-cell transcriptomic assays have enabled the de novo reconstruction of lineage differentiation trajectories, along with the characterization of cellular heterogeneity and state transitions. Several methods have been developed for reconstructing developmental trajectories from single-cell transcriptomic data, but efforts on analyzing single-cell epigenomic data and on trajectory visualization remain limited. Here we present STREAM, an interactive pipeline capable of disentangling and visualizing complex branching trajectories from both single-cell transcriptomic and epigenomic data.
- Downloaded 3,456 times
- Download rankings, all-time:
- Site-wide: 902 out of 67,351
- In genomics: 233 out of 4,574
- Year to date:
- Site-wide: 1,291 out of 67,351
- Since beginning of last month:
- Site-wide: 10,851 out of 67,351
Downloads over time
Distribution of downloads per paper, site-wide
- Top preprints of 2018
- Paper search
- Author leaderboards
- Overall metrics
- The API
- Email newsletter
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
- 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
- 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
- 22 Jan 2019: Nature just published an article about Rxivist and our data.
- 13 Jan 2019: The Rxivist preprint is live!