Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data
Alan K. Jarmusch,
Christine M. Aceves,
Rohit S. Advani,
Alexander A. Aksenov,
Allegra T. Aron,
Andrés Mauricio Caraballo-Rodríguez,
Emmanuel O. Elijah,
Julia M. Gauglitz,
Emily C. Gentry,
Scott A Jarmusch,
Kenneth L. Jones,
Audrey Le Gouellec,
Kerry L. McPhail,
Michael J Meehan,
Alexey V. Melnik,
Riya C. Menezes,
Yessica Alejandra Montoya Giraldo,
Ngoc Hung Nguyen,
Justin J.J. van der Hooft,
Kelly C. Weldon,
Pieter C. Dorrestein
Posted 29 Aug 2019
bioRxiv DOI: 10.1101/750471 (published DOI: 10.1038/s41592-020-0916-7)
Posted 29 Aug 2019
Metabolomics data are difficult to find and reuse, even in public repositories. We, therefore, developed the Reanalysis of Data User (ReDU) interface (https://redu.ucsd.edu/), a community- and data-driven approach that solves this problem at the repository scale. ReDU enables public data discovery and co- or re-analysis via uniformly formatted, publicly available MS/MS data and metadata in the Global Natural Product Social Molecular Networking Platform (GNPS), consistent with findable, accessible, interoperable, and reusable (FAIR) principles.
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