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Elevated risk of invasive group A streptococcal disease and host genetic variation in the human leukocyte antigen locus

By Tom Parks, Katherine Elliott, Theresa L. Lamagni, Kathryn Auckland, Alexander J Mentzer, Rebecca Guy, Doreen Cartledge, Lenka Strakova, Daniel O’Connor, Andrew J. Pollard, Matthew J Neville, Anubha Mahajan, Houman Ashrafian, Stephen J Chapman, Adrian VS Hill, Shiranee Sriskandan, Julian Knight

Posted 24 Feb 2019
bioRxiv DOI: 10.1101/559161

Invasive group A streptococcal (GAS) disease is uncommon but carries a high case-fatality rate relative to other infectious diseases. Given the ubiquity of mild GAS infections, it remains unclear why healthy individuals will occasionally develop life-threatening infections, raising the possibility of host genetic predisposition. Here, we present the results of a case-control study including 43 invasive GAS cases and 1,540 controls. Using HLA imputation and linear mixed-models, we find each copy of the HLA-DQA1*01:03 allele associates with a two-fold increased risk of disease (odds ratio 2.3, 95% confidence interval 1.3-4.4, P=0.009), an association which persists with classical HLA typing of a subset of cases and analysis with an alternative large control dataset with validated HLA data. Moreover, we propose the association is driven by the allele itself rather than the background haplotype. Overall this finding provides impetus for further investigation of the immunogenetic basis of this devastating bacterial disease.

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