MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides
Kelsey L Alexander,
C Benjamin Naman,
Tiago F Leão,
Nathan A Moss,
Nitin K Singh,
Jon G Sanders,
Rodolfo A S Benitez,
Luke R Thompson,
James T. Morton,
Pieter C Dorrestein,
Pavel A. Pevzner
Posted 03 Dec 2017
bioRxiv DOI: 10.1101/227504
Posted 03 Dec 2017
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are an important class of natural products that include many antibiotics and a variety of other bioactive compounds. While recent breakthroughs in RiPP discovery raised the challenge of developing new algorithms for their analysis, peptidogenomic-based identification of RiPPs by combining genome/metagenome mining with analysis of tandem mass spectra remains an open problem. We present here MetaRiPPquest, a software tool for addressing this challenge that is compatible with large-scale screening platforms for natural product discovery. After searching millions of spectra in the Global Natural Products Social (GNPS) molecular networking infrastructure against just six genomic and metagenomic datasets, MetaRiPPquest identified 27 known and discovered 5 novel RiPP natural products.
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