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NanoPack: visualizing and processing long read sequencing data

By De Coster Wouter, Svenn D’Hert, V. Raicu, Marc Cruts, Christine Van Broeckhoven

Posted 21 Dec 2017
bioRxiv DOI: 10.1101/237180 (published DOI: 10.1093/bioinformatics/bty149)

Here we describe NanoPack, a set of tools developed for visualization and processing of long read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences. Availability and Implementation: The NanoPack tools are written in Python3 and released under the GNU GPL3.0 Licence. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools.

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