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Escherichia coli can survive stress by noisy growth modulation

By Om Patange, Christian Schwall, Matthew C. Jones, Douglas Griffith, Andrew Phillips, James C.W. Locke

Posted 15 Feb 2018
bioRxiv DOI: 10.1101/265801 (published DOI: 10.1038/s41467-018-07702-z)

Gene expression can be noisy, as can the growth of single cells. Such cell-to-cell variation has been implicated in survival strategies for bacterial populations. However, it remains unclear how single cells couple gene expression with growth to implement these survival strategies. Here we show how noisy expression of a key stress response regulator, rpoS, allows E. coli to modulate its growth dynamics to survive future adverse environments. First, we demonstrate that rpoS has a long-tailed distribution of expression in an unstressed population of cells. We next reveal how a dynamic positive feedback loop between rpoS and growth rate produces multi-generation rpoS pulses, which are responsible for the rpoS heterogeneity. We do so experimentally with single-cell, time-lapse microscopy and microfluidics and theoretically with a stochastic model. Finally, we demonstrate the function of the coupling of heterogeneous rpoS activity and growth. It enables E. coli to survive oxidative attack by causing prolonged periods of slow growth. This dynamic phenotype is captured by the rpoS-growth feedback model. Our synthesis of noisy gene expression, growth, and survival paves the way for further exploration of functional phenotypic variability.

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