Rxivist logo

Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions

By Sacha Laurent, Marc Robinson-Rechavi, Nicolas Salamin

Posted 25 Apr 2014
bioRxiv DOI: 10.1101/004572 (published DOI: 10.1186/s12862-015-0432-z)

Recent methodological advances are enabling better examination of speciation and extinction processes and patterns. A major open question is the origin of large discrepancies in species number between groups of the same age. Existing frameworks to model this diversity either focus on changes between lineages, neglecting global effects such as mass extinctions, or focus on changes over time which would affect all lineages. Yet it seems probable that both lineages differences and mass extinctions affect the same groups. Here we used simulations to test the performance of two widely used methods, under complex scenarios. We report good performances, although with a tendency to over-predict events when increasing the complexity of the scenario. Overall, we find that lineage shifts are better detected than mass extinctions. This work has significance for assessing the methods currently used for estimating changes in diversification using phylogenies and developing new tests.

Download data

  • Downloaded 614 times
  • Download rankings, all-time:
    • Site-wide: 25,079 out of 92,758
    • In evolutionary biology: 1,619 out of 5,628
  • Year to date:
    • Site-wide: 88,728 out of 92,758
  • Since beginning of last month:
    • Site-wide: 79,728 out of 92,758

Altmetric data

Downloads over time

Distribution of downloads per paper, site-wide


Sign up for the Rxivist weekly newsletter! (Click here for more details.)