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OpenMonkeyChallenge: Dataset and Benchmark Challenges for Pose Tracking of Non-human Primates

By Yuan Yao, Abhiraj Abhiraj Mohan, Eliza Bliss-Moreau, Kristine Coleman, Sienna M Freeman, Christopher J Machado, Jessica Raper, Jan Zimmermann, Benjamin Y Hayden, Hyun Soo Park

Posted 10 Sep 2021
bioRxiv DOI: 10.1101/2021.09.08.459549

The ability to automatically track non-human primates as they move through the world is important for several subfields in biology and biomedicine. Inspired by the recent success of computer vision models enabled by benchmark challenges (e.g., object detection), we propose a new benchmark challenge called OpenMonkeyChallenge that facilitates collective community efforts through an annual competition to build generalizable non-human primate pose tracking models. To host the benchmark challenge, we provide a new public dataset consisting of 111,529 annotated (17 body landmarks) photographs of non-human primates in naturalistic contexts obtained from various sources including the internet, three National Primate Research Centers, and the Minnesota Zoo. Such annotated datasets will be used for the training and testing datasets to develop generalizable models with standardized evaluation metrics. We demonstrate the effectiveness of our dataset quantitatively by comparing it with existing datasets based on seven state-of-the-art pose tracking models.

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