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An external validation of the QCovid risk prediction algorithm for risk of mortality from COVID-19 in adults: national validation cohort study in England

By Vahe Nafilyan, Ben Humberstone, Nisha Metha, Ian Diamond, Luke Lorenzi, Piotr Pawelek, Ryan Schofield, Jasper Morgan, Paul Brown, Ronan A Lyons, Aziz Sheikh, Julia Hippisley-Cox

Posted 25 Jan 2021
medRxiv DOI: 10.1101/2021.01.22.21249968

Background: To externally validate a risk prediction algorithm (QCovid) to estimate mortality outcomes from COVID-19 in adults in England. Methods: Population-based cohort study using the ONS Public Health Linked Data Asset, a cohort based on the 2011 Census linked to Hospital Episode Statistics, the General Practice Extraction Service Data for pandemic planning and research, radiotherapy and systemic chemotherapy records. The primary outcome was time to COVID-19 death, defined as confirmed or suspected COVID-19 death as per death certification. Two time periods were used: (a) 24thJanuary to 30thApril 2020; and (b) 1st May to 28th July 2020. We evaluated the performance of the QCovid algorithms using measures of discrimination and calibration for each validation time period. Findings: The study comprises 34,897,648 adults aged 19-100 years resident in England There were 26,985 COVID-19 deaths during the first time-period and 13,177 during the second. The algorithms had good calibration in the validation cohort in both time periods with close correspondence of observed and predicted risks. They explained 77.1% (95% CI: 76.9% to 77.4%) of the variation in time to death in men in the first time-period (R2); the D statistic was 3.76 (95% CI: 3.73 to 3.79); Harrell's C was 0.935 (0.933 to 0.937) Similar results were obtained for women, and in the second time-period In the top 5% of patients with the highest predicted risks of death, the sensitivity for identifying deaths in the first time period was 65.9% for men and 71.7% for women. People in the top 20% of predicted risks of death accounted for 90.8% of all COVID-19 deaths for men and 93.0% for women. Interpretation: The QCovid population-based risk algorithm performed well, showing very high levels of discrimination for COVID-19 deaths in men and women for both time periods. It has the potential to be dynamically updated as the pandemic evolves and therefore, has potential use in guiding national policy. Funding: National Institute of Health Research

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