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Polygenic hazard score predicts aggressive and fatal prostate cancer in multi-ethnic populations

By Minh-Phuong Huynh-Le, Chun Chieh Fan, Roshan Karunamuni, Wesley K. Thompson, Maria Elena Martinez, Rosalind A. Eeles, Zsofia Kote-Jarai, Kenneth Muir, UKGPCS collaborators, Johanna Schleutker, Nora Pashayan, Jyotsna Batra, APCB (Australian Prostate Cancer BioResource), Henrik Grönberg, David E Neal, Jenny Donovan, Freddie C. Hamdy, Richard Martin, Sune F. Nielsen, Børge G Nordestgaard, Fredrik Wiklund, Catherine M. Tangen, Graham G Giles, Alicja Wolk, Demetrius Albanes, Ruth C. Travis, William J. Blot, Wei Zheng, Maureen Sanderson, Janet L. Stanford, Lorelei A Mucci, Catharine M. L. West, Adam S. Kibel, Olivier Cussenot, Sonja I. Berndt, Stella Koutros, Karina Dalsgaard Soerensen, Cezary Cybulski, Eli Marie Grindedal, Florence Menegaux, Kay-Tee Khaw, Jong Y. Park, Sue A. Ingles, Christiane Maier, Robert J. Hamilton, Stephen N Thibodeau, Barry S. Rosenstein, Yong-Jie Lu, Stephen Watya, Ana Vega, NC-LA PCaP Investigators, The IMPACT Study Steering Committee and Collaborators, Manolis Kogevinas, Kathryn L Penney, Chad Huff, Marta Cardoso, Luc Multigner, Robin J. Leach, Lisa Cannon-Albright, Hermann Brenner, Esther M. John, Radka Kaneva, Christopher J. Logothetis, Susan L. Neuhausen, Kim De Ruyck, Hardev Pandha, Azad Razack, Lisa F. Newcomb, Canary P ASS Investigators, Jay Fowke, Marija Gamulin, Nawaid Usmani, F Claessens, Manuela Gago-Dominguez, Paul A. Townsend, William S Bush, Shiv Srivastava, Monique Roobol, Marie-Élise Parent, Jennifer J Hu, The Profile Study Steering Committee, Ian Mills, Ole A. Andreassen, Anders Dale, Tyler M Seibert, The PRACTICAL Consortium

Posted 19 Nov 2019
medRxiv DOI: 10.1101/19012237

BackgroundProstate cancer causes substantial morbidity and mortality worldwide. Recently, a polygenic hazard score (PHS1)--the weighted sum of 54 single-nucleotide polymorphism (SNP) genotypes--was developed and validated to predict age of aggressive prostate cancer onset in Caucasians. We evaluated the performance of the PHS for prediction of aggressive prostate cancer and of death from prostate cancer across diverse ethnic populations. Methods80,491 men of various self-reported race/ethnicities were included (30,575 controls, 49,916 cases. Previously determined genetic ancestries for these men were: 71,856 European, 6,253 African, and 2,382 Asian. Where applicable, age of prostate cancer diagnosis, age at last follow-up, TNM stage, PSA, Gleason score, and cause of death were also determined. Median age at last follow-up was 70 years (IQR 63-76). 3,983 men died from prostate cancer, 5,806 died from non-prostate cancer causes, and 70,702 were still alive at the end of follow-up. Patient samples were previously genotyped on a cancer-specific array; PHS1 was adapted for compatibility with this array (PHS2) and tested in the multi-ethnic dataset via Cox proportional hazards models for age of aggressive prostate cancer onset and for age at prostate-cancer-specific death. ResultsPHS2 had 46 SNPs: 24 directly genotyped and 22 acceptable proxies (r2[&ge;]0.94). PHS2 was predictive of age of aggressive prostate cancer onset in the independent, multi-ethnic dataset (z=48, p<10-16) and in each genetic ancestry: European (z=46, p<10-16), Asian (z=44, p<10-16), and African (z=24, p<10-16). PHS2 was also predictive of age of prostate cancer death in the multi-ethnic dataset (z=16, p<10-16). Comparing the 80th and 20th percentiles of genetic risk, men with high PHS had a hazard ratio of 5.9 for aggressive prostate cancer and 5.7 for prostate cancer death. Within each genetic ancestry group, analogous hazard ratios for aggressive prostate cancer were 5.6, 5.2, and 2.4 for men of European, Asian, and African ancestry, respectively. ConclusionsPHS2 is highly predictive of both age of onset of aggressive prostate cancer and age of prostate-cancer-specific death in a multi-ethnic dataset. Genetic risk stratification via PHS could guide individualized screening and treatment strategies for fatal and potentially fatal prostate cancer for men of European, Asian, and African genetic ancestry.

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