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Author: The COVID-19 Genomics UK (COG-UK) consortium

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Rankings

  • All-time downloads: 43,412 (rank: 4,985 )
  • Categories:
    • bioinformatics: 1,806 (rank: 10,122 (tie) )
    • epidemiology: 15,669 (rank: 1,267 )
    • genomics: 3,188 (rank: 8,959 (tie) )
    • infectious diseases: 22,749 (rank: 3,177 )

Downloads per author, site-wide

Preprints

SARS-CoV-2 B.1.1.7 sensitivity to mRNA vaccine-elicited, convalescent and monoclonal antibodies

infectious diseases more details view paper
  • Downloaded 15,633 times
  • Download rankings, all-time:
    • Site-wide: 654
    • In infectious diseases: 246
  • Year to date:
    • Site-wide: 3,679
  • Since beginning of last month:
    • Site-wide: 1,776

Changes in symptomatology, re-infection and transmissibility associated with SARS-CoV-2 variant B.1.1.7: an ecological study

epidemiology more details view paper
  • Downloaded 8,436 times
  • Download rankings, all-time:
    • Site-wide: 1,420
    • In epidemiology: 193
  • Year to date:
    • Site-wide: 2,922
  • Since beginning of last month:
    • Site-wide: 3,102

Large scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management

epidemiology more details view paper
  • Downloaded 2,584 times
  • Download rankings, all-time:
    • Site-wide: 7,163
    • In epidemiology: 618
  • Year to date:
    • Site-wide: 38,218
  • Since beginning of last month:
    • Site-wide: 23,671

Exponential growth, high prevalence of SARS-CoV-2 and vaccine effectiveness associated with Delta variant in England during May to July 2021

epidemiology more details view paper
  • Downloaded 2,204 times
  • Download rankings, all-time:
    • Site-wide: 9,025
    • In epidemiology: 742
  • Year to date:
    • Site-wide: 5,428
  • Since beginning of last month:
    • Site-wide: 3,192

Altered Sub-Genomic RNA Expression in SARS-CoV-2 B.1.1.7 Infections

genomics more details view paper
  • Downloaded 1,739 times
  • Download rankings, all-time:
    • Site-wide: 12,835
    • In genomics: 1,253
  • Year to date:
    • Site-wide: 74,822
  • Since beginning of last month:
    • Site-wide: 21,739

Detecting SARS-CoV-2 variants with SNP genotyping

genomics more details view paper
  • Downloaded 1,449 times
  • Download rankings, all-time:
    • Site-wide: 16,959
    • In genomics: 1,599
  • Year to date:
    • Site-wide: 50,727
  • Since beginning of last month:
    • Site-wide: 85,995

Characterising within-hospital SARS-CoV-2 transmission events: a retrospective analysis integrating epidemiological and viral genomic data from a UK tertiary care setting across two pandemic waves

infectious diseases more details view paper
  • Downloaded 1,426 times
  • Download rankings, all-time:
    • Site-wide: 17,372
    • In infectious diseases: 2,016
  • Year to date:
    • Site-wide: 3,349
  • Since beginning of last month:
    • Site-wide: 5,284

Early Analysis of a potential link between viral load and the N501Y mutation in the SARS-COV-2 spike protein

infectious diseases more details view paper
  • Downloaded 1,386 times
  • Download rankings, all-time:
    • Site-wide: 18,120
    • In infectious diseases: 2,053
  • Year to date:
    • Site-wide: 38,505
  • Since beginning of last month:
    • Site-wide: 30,831

periscope: Sub-Genomic RNA Identification in SARS-CoV-2 Genomic Sequencing Data

bioinformatics more details view paper
  • Downloaded 1,284 times
  • Download rankings, all-time:
    • Site-wide: 20,333
    • In bioinformatics: 2,267
  • Year to date:
    • Site-wide: 63,626
  • Since beginning of last month:
    • Site-wide: 73,408

Generation and transmission of inter-lineage recombinants in the SARS-CoV-2 pandemic

infectious diseases more details view paper
  • Downloaded 1,012 times
  • Download rankings, all-time:
    • Site-wide: 29,124
    • In infectious diseases: 2,618
  • Year to date:
    • Site-wide: 9,680
  • Since beginning of last month:
    • Site-wide: 2,388

Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data

infectious diseases more details view paper
  • Downloaded 917 times
  • Download rankings, all-time:
    • Site-wide: 33,702
    • In infectious diseases: 2,833
  • Year to date:
    • Site-wide: 6,113
  • Since beginning of last month:
    • Site-wide: 4,047

Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

epidemiology more details view paper
  • Downloaded 868 times
  • Download rankings, all-time:
    • Site-wide: 36,518
    • In epidemiology: 1,944
  • Year to date:
    • Site-wide: 25,647
  • Since beginning of last month:
    • Site-wide: 30,921

Remdesivir induced viral RNA and subgenomic RNA suppression, and evolution of viral variants in SARS-CoV-2 infected patients.

infectious diseases more details view paper
  • Downloaded 719 times
  • Download rankings, all-time:
    • Site-wide: 47,801
    • In infectious diseases: 3,402
  • Year to date:
    • Site-wide: 20,403
  • Since beginning of last month:
    • Site-wide: 72,758

Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 transmission identifies community social distancing as the dominant intervention reducing outbreaks

infectious diseases more details view paper
  • Downloaded 576 times
  • Download rankings, all-time:
    • Site-wide: 64,132
    • In infectious diseases: 3,888
  • Year to date:
    • Site-wide: 37,346
  • Since beginning of last month:
    • Site-wide: 86,058

Model design for non-parametric phylodynamic inference and applications to pathogen surveillance

bioinformatics more details view paper
  • Downloaded 522 times
  • Download rankings, all-time:
    • Site-wide: 72,182
    • In bioinformatics: 6,750
  • Year to date:
    • Site-wide: 74,090
  • Since beginning of last month:
    • Site-wide: 16,764

The SARS-CoV-2 Alpha variant is associated with increased clinical severity of disease

epidemiology more details view paper
  • Downloaded 490 times
  • Download rankings, all-time:
    • Site-wide: 77,554
    • In epidemiology: 3,459
  • Year to date:
    • Site-wide: 44,694
  • Since beginning of last month:
    • Site-wide: 17,375

Lineage replacement and evolution captured by the United Kingdom Covid Infection Survey

epidemiology more details view paper
  • Downloaded 418 times
  • Download rankings, all-time:
    • Site-wide: 91,805
    • In epidemiology: 4,001
  • Year to date:
    • Site-wide: 264
  • Since beginning of last month:
    • Site-wide: None

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: two prospective observational cohort studies

epidemiology more details view paper
  • Downloaded 404 times
  • Download rankings, all-time:
    • Site-wide: 94,793
    • In epidemiology: 4,109
  • Year to date:
    • Site-wide: 9,633
  • Since beginning of last month:
    • Site-wide: 4,184

SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men

infectious diseases more details view paper
  • Downloaded 394 times
  • Download rankings, all-time:
    • Site-wide: 97,114
    • In infectious diseases: 4,809
  • Year to date:
    • Site-wide: 83,389
  • Since beginning of last month:
    • Site-wide: 113,303

Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions

epidemiology more details view paper
  • Downloaded 265 times
  • Download rankings, all-time:
    • Site-wide: 130,342
    • In epidemiology: 5,504
  • Year to date:
    • Site-wide: 448
  • Since beginning of last month:
    • Site-wide: None

Localised community circulation of SARS-CoV-2 viruses with an increased accumulation of single nucleotide polymorphisms that adversely affect the sensitivity of real-time reverse transcription assays targeting Nucleocapsid protein.

infectious diseases more details view paper
  • Downloaded 242 times
  • Download rankings, all-time:
    • Site-wide: 136,530
    • In infectious diseases: 5,921
  • Year to date:
    • Site-wide: 28,960
  • Since beginning of last month:
    • Site-wide: 53,168

Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units - a high risk community-hospital interface

infectious diseases more details view paper
  • Downloaded 224 times
  • Download rankings, all-time:
    • Site-wide: 141,293
    • In infectious diseases: 6,059
  • Year to date:
    • Site-wide: 35,646
  • Since beginning of last month:
    • Site-wide: 53,151

Defining the analytical and clinical sensitivity of the ARTIC method for the detection of SARS-CoV-2

infectious diseases more details view paper
  • Downloaded 220 times
  • Download rankings, all-time:
    • Site-wide: 142,221
    • In infectious diseases: 6,099
  • Year to date:
    • Site-wide: 83,350
  • Since beginning of last month:
    • Site-wide: 112,956

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