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Author: The COVID-19 Genomics UK (COG-UK) consortium

  • Most recently observed institution: https://www.cogconsortium.uk - Full list of consortium names and affiliations are in the appendix

Rankings

  • All-time downloads: 56,252 (rank: 4,537 )
  • Categories:
    • bioinformatics: 2,067 (rank: 10,171 (tie) )
    • epidemiology: 20,116 (rank: 1,161 )
    • genomics: 3,490 (rank: 9,140 (tie) )
    • infectious diseases: 28,556 (rank: 2,908 )

Downloads per author, site-wide

Preprints

Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England

evolutionary biology more details view paper

No download data for this paper yet.

SARS-CoV-2 B.1.1.7 sensitivity to mRNA vaccine-elicited, convalescent and monoclonal antibodies

infectious diseases more details view paper
  • Downloaded 17,472 times
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    • Site-wide: 664
    • In infectious diseases: 246
  • Year to date:
    • Site-wide: 1,274
  • Since beginning of last month:
    • Site-wide: 4,350

Changes in symptomatology, re-infection and transmissibility associated with SARS-CoV-2 variant B.1.1.7: an ecological study

epidemiology more details view paper
  • Downloaded 9,298 times
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    • Site-wide: 1,475
    • In epidemiology: 197
  • Year to date:
    • Site-wide: 3,942
  • Since beginning of last month:
    • Site-wide: 9,852

Large scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management

epidemiology more details view paper
  • Downloaded 2,732 times
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    • Site-wide: 8,129
    • In epidemiology: 674
  • Year to date:
    • Site-wide: 62,880
  • Since beginning of last month:
    • Site-wide: 80,941

Inconsistent directions of change in case severity across successive SARS-CoV-2 variant waves suggests an unpredictable future

epidemiology more details view paper
  • Downloaded 2,440 times
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    • Site-wide: 9,630
    • In epidemiology: 894
  • Year to date:
    • Site-wide: 865
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Exponential growth, high prevalence of SARS-CoV-2 and vaccine effectiveness associated with Delta variant in England during May to July 2021

epidemiology more details view paper
  • Downloaded 2,411 times
  • Download rankings, all-time:
    • Site-wide: 9,809
    • In epidemiology: 781
  • Year to date:
    • Site-wide: 34,685
  • Since beginning of last month:
    • Site-wide: 48,301

Altered Sub-Genomic RNA Expression in SARS-CoV-2 B.1.1.7 Infections

genomics more details view paper
  • Downloaded 2,031 times
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    • Site-wide: 12,679
    • In genomics: 1,155
  • Year to date:
    • Site-wide: 25,625
  • Since beginning of last month:
    • Site-wide: 30,923

Characterising within-hospital SARS-CoV-2 transmission events: a retrospective analysis integrating epidemiological and viral genomic data from a UK tertiary care setting across two pandemic waves

infectious diseases more details view paper
  • Downloaded 1,803 times
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    • Site-wide: 15,252
    • In infectious diseases: 1,979
  • Year to date:
    • Site-wide: 14,108
  • Since beginning of last month:
    • Site-wide: 99,032

Recurrent SARS-CoV-2 Mutations in Immunodeficient Patients

infectious diseases more details view paper
  • Downloaded 1,670 times
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    • Site-wide: 17,126
    • In infectious diseases: 2,213
  • Year to date:
    • Site-wide: 1,522
  • Since beginning of last month:
    • Site-wide: 22,858

Early Analysis of a potential link between viral load and the N501Y mutation in the SARS-COV-2 spike protein

infectious diseases more details view paper
  • Downloaded 1,550 times
  • Download rankings, all-time:
    • Site-wide: 19,284
    • In infectious diseases: 2,246
  • Year to date:
    • Site-wide: 56,336
  • Since beginning of last month:
    • Site-wide: 45,206

Detecting SARS-CoV-2 variants with SNP genotyping

genomics more details view paper
  • Downloaded 1,535 times
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    • Site-wide: 19,572
    • In genomics: 1,702
  • Year to date:
    • Site-wide: 103,349
  • Since beginning of last month:
    • Site-wide: 170,795

Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data

infectious diseases more details view paper
  • Downloaded 1,503 times
  • Download rankings, all-time:
    • Site-wide: 20,246
    • In infectious diseases: 2,352
  • Year to date:
    • Site-wide: 7,616
  • Since beginning of last month:
    • Site-wide: 25,875

periscope: Sub-Genomic RNA Identification in SARS-CoV-2 Genomic Sequencing Data

bioinformatics more details view paper
  • Downloaded 1,443 times
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    • Site-wide: 21,615
    • In bioinformatics: 2,333
  • Year to date:
    • Site-wide: 59,224
  • Since beginning of last month:
    • Site-wide: 57,940

Severe outcomes in residents of Long Term Care Facilities following infection with SARS-CoV-2 Omicron variant (VIVALDI study)

infectious diseases more details view paper
  • Downloaded 1,233 times
  • Download rankings, all-time:
    • Site-wide: 27,755
    • In infectious diseases: 2,720
  • Year to date:
    • Site-wide: 2,452
  • Since beginning of last month:
    • Site-wide: 156,097

Generation and transmission of inter-lineage recombinants in the SARS-CoV-2 pandemic

infectious diseases more details view paper
  • Downloaded 1,180 times
  • Download rankings, all-time:
    • Site-wide: 29,736
    • In infectious diseases: 2,811
  • Year to date:
    • Site-wide: 49,097
  • Since beginning of last month:
    • Site-wide: 86,753

Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

epidemiology more details view paper
  • Downloaded 1,042 times
  • Download rankings, all-time:
    • Site-wide: 36,032
    • In epidemiology: 1,940
  • Year to date:
    • Site-wide: 51,156
  • Since beginning of last month:
    • Site-wide: 117,031

Remdesivir induced viral RNA and subgenomic RNA suppression, and evolution of viral variants in SARS-CoV-2 infected patients.

infectious diseases more details view paper
  • Downloaded 850 times
  • Download rankings, all-time:
    • Site-wide: 49,166
    • In infectious diseases: 3,665
  • Year to date:
    • Site-wide: 68,541
  • Since beginning of last month:
    • Site-wide: 84,516

The SARS-CoV-2 Alpha variant is associated with increased clinical severity of disease in Scotland: a genomics-based prospective cohort analysis

epidemiology more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 52,215
    • In epidemiology: 2,849
  • Year to date:
    • Site-wide: 21,002
  • Since beginning of last month:
    • Site-wide: 33,094

Lineage replacement and evolution captured by the United Kingdom Covid Infection Survey

epidemiology more details view paper
  • Downloaded 763 times
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    • Site-wide: 57,760
    • In epidemiology: 2,881
  • Year to date:
    • Site-wide: 5,314
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    • Site-wide: 37,972

Model design for non-parametric phylodynamic inference and applications to pathogen surveillance

bioinformatics more details view paper
  • Downloaded 709 times
  • Download rankings, all-time:
    • Site-wide: 64,294
    • In bioinformatics: 6,217
  • Year to date:
    • Site-wide: 48,699
  • Since beginning of last month:
    • Site-wide: 116,924

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: two prospective observational cohort studies

epidemiology more details view paper
  • Downloaded 705 times
  • Download rankings, all-time:
    • Site-wide: 64,691
    • In epidemiology: 3,158
  • Year to date:
    • Site-wide: 22,237
  • Since beginning of last month:
    • Site-wide: 139,255

Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 transmission identifies community social distancing as the dominant intervention reducing outbreaks

infectious diseases more details view paper
  • Downloaded 653 times
  • Download rankings, all-time:
    • Site-wide: 72,082
    • In infectious diseases: 4,457
  • Year to date:
    • Site-wide: 111,662
  • Since beginning of last month:
    • Site-wide: 112,910

Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions

epidemiology more details view paper
  • Downloaded 553 times
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    • Site-wide: 88,878
    • In epidemiology: 3,948
  • Year to date:
    • Site-wide: 9,080
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    • Site-wide: 75,104

SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men

infectious diseases more details view paper
  • Downloaded 453 times
  • Download rankings, all-time:
    • Site-wide: 111,047
    • In infectious diseases: 5,660
  • Year to date:
    • Site-wide: 144,245
  • Since beginning of last month:
    • Site-wide: 137,528

Localised community circulation of SARS-CoV-2 viruses with an increased accumulation of single nucleotide polymorphisms that adversely affect the sensitivity of real-time reverse transcription assays targeting Nucleocapsid protein.

infectious diseases more details view paper
  • Downloaded 420 times
  • Download rankings, all-time:
    • Site-wide: 119,459
    • In infectious diseases: 5,947
  • Year to date:
    • Site-wide: 50,134
  • Since beginning of last month:
    • Site-wide: 133,764

Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units - a high risk community-hospital interface

infectious diseases more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 129,457
    • In infectious diseases: 6,141
  • Year to date:
    • Site-wide: 57,245
  • Since beginning of last month:
    • Site-wide: 174,213

Defining the analytical and clinical sensitivity of the ARTIC method for the detection of SARS-CoV-2

infectious diseases more details view paper
  • Downloaded 347 times
  • Download rankings, all-time:
    • Site-wide: 140,376
    • In infectious diseases: 6,625
  • Year to date:
    • Site-wide: 74,878
  • Since beginning of last month:
    • Site-wide: 54,032

Spatio-temporal epidemiology of SARS-CoV-2 virus lineages in Teesside, UK, in 2020: effects of social deprivation, weather and lockdown on lineage dynamics

epidemiology more details view paper
  • Downloaded 253 times
  • Download rankings, all-time:
    • Site-wide: 168,050
    • In epidemiology: 6,768
  • Year to date:
    • Site-wide: 32,163
  • Since beginning of last month:
    • Site-wide: 114,750

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