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Author: Chi Zhang

Rankings

  • All-time downloads: 81,546 (rank: 1,863 (tie) )
  • Categories:
    • biochemistry: 700 (rank: 8,694 (tie) )
    • bioengineering: 1,207 (rank: 2,925 (tie) )
    • bioinformatics: 12,498 (rank: 601 )
    • biophysics: 197 (rank: 19,877 (tie) )
    • cancer biology: 1,424 (rank: 5,699 )
    • cell biology: 416 (rank: 24,504 (tie) )
    • epidemiology: 1,196 (rank: 9,238 (tie) )
    • evolutionary biology: 5,361 (rank: 582 )
    • genetics: 967 (rank: 16,819 (tie) )
    • genomics: 528 (rank: 36,093 (tie) )
    • immunology: 900 (rank: 12,717 (tie) )
    • infectious diseases: 43,442 (rank: 1,153 (tie) )
    • microbiology: 7,968 (rank: 1,899 )
    • molecular biology: 348 (rank: 18,729 (tie) )
    • neuroscience: 2,992 (rank: 7,770 (tie) )
    • physiology: 208 (rank: 9,021 (tie) )
    • plant biology: 1,194 (rank: 3,459 (tie) )

Downloads per author, site-wide

Preprints

Effect of non-pharmaceutical interventions for containing the COVID-19 outbreak: an observational and modelling study

infectious diseases more details view paper
  • Downloaded 43,442 times
  • Download rankings, all-time:
    • Site-wide: 151
    • In infectious diseases: 58
  • Year to date:
    • Site-wide: 820
  • Since beginning of last month:
    • Site-wide: 1,431

MRCA time and epidemic dynamics of the 2019 novel coronavirus

microbiology more details view paper
  • Downloaded 7,022 times
  • Download rankings, all-time:
    • Site-wide: 1,450
    • In microbiology: 129
  • Year to date:
    • Site-wide: 15,873
  • Since beginning of last month:
    • Site-wide: 31,643

QuickRNASeq: Guide For Pipeline Implementation And For Interactive Results Visualization

bioinformatics more details view paper
  • Downloaded 2,533 times
  • Download rankings, all-time:
    • Site-wide: 6,097
    • In bioinformatics: 650
  • Year to date:
    • Site-wide: 53,056
  • Since beginning of last month:
    • Site-wide: 63,514

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on variant call format files

bioinformatics more details view paper
  • Downloaded 2,193 times
  • Download rankings, all-time:
    • Site-wide: 7,517
    • In bioinformatics: 857
  • Year to date:
    • Site-wide: 2,569
  • Since beginning of last month:
    • Site-wide: 15,989

ICTD: A semi-supervised cell type identification and deconvolution method for multi-omics data

bioinformatics more details view paper
  • Downloaded 1,422 times
  • Download rankings, all-time:
    • Site-wide: 14,279
    • In bioinformatics: 1,661
  • Year to date:
    • Site-wide: 46,754
  • Since beginning of last month:
    • Site-wide: 49,013

BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis

evolutionary biology more details view paper
  • Downloaded 1,365 times
  • Download rankings, all-time:
    • Site-wide: 15,190
    • In evolutionary biology: 523
  • Year to date:
    • Site-wide: 50,996
  • Since beginning of last month:
    • Site-wide: 37,795

Joint inference of species histories and gene flow

evolutionary biology more details view paper
  • Downloaded 1,175 times
  • Download rankings, all-time:
    • Site-wide: 18,986
    • In evolutionary biology: 692
  • Year to date:
    • Site-wide: 16,179
  • Since beginning of last month:
    • Site-wide: 30,409

Using LASSO in gene co-expression network for genome-wide identification of gene interactions responding to salt stress in rice

bioinformatics more details view paper
  • Downloaded 1,017 times
  • Download rankings, all-time:
    • Site-wide: 23,509
    • In bioinformatics: 2,699
  • Year to date:
    • Site-wide: 36,475
  • Since beginning of last month:
    • Site-wide: 17,618

A graph neural network model to estimate cell-wise metabolic flux using single cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 999 times
  • Download rankings, all-time:
    • Site-wide: 24,081
    • In bioinformatics: 2,762
  • Year to date:
    • Site-wide: 4,849
  • Since beginning of last month:
    • Site-wide: 11,806

Dissecting limiting factors of the Protein synthesis Using Recombinant Elements (PURE) system

bioengineering more details view paper
  • Downloaded 994 times
  • Download rankings, all-time:
    • Site-wide: 24,289
    • In bioengineering: 417
  • Year to date:
    • Site-wide: 110,253
  • Since beginning of last month:
    • Site-wide: 71,557

Exploring Frequency-dependent Brain Networks from ongoing EEG using Spatial ICA during music listening

neuroscience more details view paper
  • Downloaded 941 times
  • Download rankings, all-time:
    • Site-wide: 26,302
    • In neuroscience: 3,358
  • Year to date:
    • Site-wide: 104,623
  • Since beginning of last month:
    • Site-wide: 109,096

QUBIC2: A novel biclustering algorithm for large-scale bulk RNA-sequencing and single-cell RNA-sequencing data analysis

bioinformatics more details view paper
  • Downloaded 938 times
  • Download rankings, all-time:
    • Site-wide: 26,435
    • In bioinformatics: 3,012
  • Year to date:
    • Site-wide: 93,765
  • Since beginning of last month:
    • Site-wide: 82,011

Bayesian Inference of Species Networks from Multilocus Sequence Data

evolutionary biology more details view paper
  • Downloaded 912 times
  • Download rankings, all-time:
    • Site-wide: 27,480
    • In evolutionary biology: 1,185
  • Year to date:
    • Site-wide: 114,774
  • Since beginning of last month:
    • Site-wide: 120,263

Lung Epithelial Cells Can Produce Antibodies Participating In Adaptive Humoral Immune Responses

immunology more details view paper
  • Downloaded 900 times
  • Download rankings, all-time:
    • Site-wide: 28,019
    • In immunology: 898
  • Year to date:
    • Site-wide: 3,377
  • Since beginning of last month:
    • Site-wide: 32,544

Assessing the effect of global travel and contact reductions to mitigate the COVID-19 pandemic and resurgence

epidemiology more details view paper
  • Downloaded 822 times
  • Download rankings, all-time:
    • Site-wide: 31,818
    • In epidemiology: 1,661
  • Year to date:
    • Site-wide: 63,255
  • Since beginning of last month:
    • Site-wide: 56,217

Bayesian tip dating reveals heterogeneous morphological clocks in Mesozoic birds

evolutionary biology more details view paper
  • Downloaded 724 times
  • Download rankings, all-time:
    • Site-wide: 37,930
    • In evolutionary biology: 1,794
  • Year to date:
    • Site-wide: 117,597
  • Since beginning of last month:
    • Site-wide: 107,327

Noise in neurons and synapses enables reliable associative memory storage in local cortical circuits

neuroscience more details view paper
  • Downloaded 667 times
  • Download rankings, all-time:
    • Site-wide: 42,274
    • In neuroscience: 5,897
  • Year to date:
    • Site-wide: 102,866
  • Since beginning of last month:
    • Site-wide: 136,063

Knocking out non-muscle myosin II in retinal ganglion cells promotes long-distance optic nerve regeneration

neuroscience more details view paper
  • Downloaded 653 times
  • Download rankings, all-time:
    • Site-wide: 43,501
    • In neuroscience: 6,097
  • Year to date:
    • Site-wide: 122,072
  • Since beginning of last month:
    • Site-wide: 61,383

Temporal Gene Coexpression Network Analysis Using A Low-rank plus Sparse Framework

bioinformatics more details view paper
  • Downloaded 645 times
  • Download rankings, all-time:
    • Site-wide: 44,179
    • In bioinformatics: 4,649
  • Year to date:
    • Site-wide: 120,542
  • Since beginning of last month:
    • Site-wide: 135,717

LTMG: A novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data

bioinformatics more details view paper
  • Downloaded 632 times
  • Download rankings, all-time:
    • Site-wide: 45,324
    • In bioinformatics: 4,733
  • Year to date:
    • Site-wide: 64,040
  • Since beginning of last month:
    • Site-wide: 62,110

The interplay of immune components and ECM in oral cancer

bioinformatics more details view paper
  • Downloaded 601 times
  • Download rankings, all-time:
    • Site-wide: 48,220
    • In bioinformatics: 4,979
  • Year to date:
    • Site-wide: 84,584
  • Since beginning of last month:
    • Site-wide: 110,780

Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference

evolutionary biology more details view paper
  • Downloaded 596 times
  • Download rankings, all-time:
    • Site-wide: 48,717
    • In evolutionary biology: 2,457
  • Year to date:
    • Site-wide: 89,147
  • Since beginning of last month:
    • Site-wide: 128,670

A Simulation-Based Evaluation of Total-Evidence Dating Under the Fossilized Birth-Death Process

evolutionary biology more details view paper
  • Downloaded 589 times
  • Download rankings, all-time:
    • Site-wide: 49,504
    • In evolutionary biology: 2,502
  • Year to date:
    • Site-wide: 130,057
  • Since beginning of last month:
    • Site-wide: 105,166

Unraveling the genetic architecture of grain size in einkorn wheat through linkage and homology mapping, and transcriptomic profiling

genetics more details view paper
  • Downloaded 582 times
  • Download rankings, all-time:
    • Site-wide: 50,227
    • In genetics: 2,250
  • Year to date:
    • Site-wide: 116,499
  • Since beginning of last month:
    • Site-wide: 140,673

Robust associative learning is sufficient to explain structural and dynamical properties of local cortical circuits

neuroscience more details view paper
  • Downloaded 575 times
  • Download rankings, all-time:
    • Site-wide: 51,120
    • In neuroscience: 7,313
  • Year to date:
    • Site-wide: 122,225
  • Since beginning of last month:
    • Site-wide: 84,484

Phosphate starvation induces replacement of phospholipids with the betaine lipid diacylglycerol-N,N,N-trimethylhomoserine in the human fungal pathogen Candida albicans

microbiology more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 52,518
    • In microbiology: 3,296
  • Year to date:
    • Site-wide: 75,172
  • Since beginning of last month:
    • Site-wide: 138,802

Wild emmer introgressions alter root-to-shoot growth dynamics in response to water stress

plant biology more details view paper
  • Downloaded 553 times
  • Download rankings, all-time:
    • Site-wide: 53,587
    • In plant biology: 1,261
  • Year to date:
    • Site-wide: 39,969
  • Since beginning of last month:
    • Site-wide: 24,548

Mapping of transgenic alleles in plants using a Nanopore-based sequencing strategy

plant biology more details view paper
  • Downloaded 521 times
  • Download rankings, all-time:
    • Site-wide: 57,540
    • In plant biology: 1,391
  • Year to date:
    • Site-wide: 116,208
  • Since beginning of last month:
    • Site-wide: 83,027

A probabilistic model-based bi-clustering method for single-cell transcriptomic data analysis

bioinformatics more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 63,795
    • In bioinformatics: 6,222
  • Year to date:
    • Site-wide: 144,340
  • Since beginning of last month:
    • Site-wide: 111,549

Ultra-deep sequencing differentiates patterns of skin clonal mutations associated with sun-exposure status and skin cancer burden

cancer biology more details view paper
  • Downloaded 446 times
  • Download rankings, all-time:
    • Site-wide: 68,124
    • In cancer biology: 1,971
  • Year to date:
    • Site-wide: 74,707
  • Since beginning of last month:
    • Site-wide: 49,883

Tissue-specific MicroRNA Expression Alters Cancer Susceptibility Conferred by a TP53 Noncoding Variant

cancer biology more details view paper
  • Downloaded 443 times
  • Download rankings, all-time:
    • Site-wide: 68,700
    • In cancer biology: 1,984
  • Year to date:
    • Site-wide: 135,574
  • Since beginning of last month:
    • Site-wide: 110,643

Sphingolipids with Very Long-chain Fatty Acids Regulate Vacuole Fusion During Tethering and Docking

cell biology more details view paper
  • Downloaded 416 times
  • Download rankings, all-time:
    • Site-wide: 73,085
    • In cell biology: 3,317
  • Year to date:
    • Site-wide: 72,241
  • Since beginning of last month:
    • Site-wide: 26,161

The genetic basis of cis-regulatory divergence between the subspecies of cultivated rice (Oryza sativa)

genomics more details view paper
  • Downloaded 388 times
  • Download rankings, all-time:
    • Site-wide: 78,169
    • In genomics: 5,202
  • Year to date:
    • Site-wide: 125,743
  • Since beginning of last month:
    • Site-wide: 107,911

A glance at recombination hotspots in the domestic cat

genetics more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 78,625
    • In genetics: 3,456
  • Year to date:
    • Site-wide: 130,908
  • Since beginning of last month:
    • Site-wide: 70,837

Characterisation of carried and invasive Neisseria meningitidis isolates in Shanghai, China from 1950 to 2016: implications for serogroup B vaccine implementation

epidemiology more details view paper
  • Downloaded 374 times
  • Download rankings, all-time:
    • Site-wide: 80,820
    • In epidemiology: 3,410
  • Year to date:
    • Site-wide: 113,373
  • Since beginning of last month:
    • Site-wide: 71,452

Bi-clustering based biological and clinical characterization of colorectal cancer in complementary to CMS classification

bioinformatics more details view paper
  • Downloaded 358 times
  • Download rankings, all-time:
    • Site-wide: 83,826
    • In bioinformatics: 7,573
  • Year to date:
    • Site-wide: 117,372
  • Since beginning of last month:
    • Site-wide: 64,027

Principles of mRNA control by human PUM proteins elucidated from multi-modal experiments and integrative data analysis

molecular biology more details view paper
  • Downloaded 348 times
  • Download rankings, all-time:
    • Site-wide: 85,943
    • In molecular biology: 2,520
  • Year to date:
    • Site-wide: 58,382
  • Since beginning of last month:
    • Site-wide: 114,701

Signalling involving MET and FAK supports cell division independent of the activity of the cell cycle-regulating CDK4/6 kinases

cancer biology more details view paper
  • Downloaded 328 times
  • Download rankings, all-time:
    • Site-wide: 90,030
    • In cancer biology: 2,691
  • Year to date:
    • Site-wide: 142,787
  • Since beginning of last month:
    • Site-wide: 137,403

Gut microbiome couples gut and brain during calorie restriction in treating obesity

microbiology more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 96,356
    • In microbiology: 6,864
  • Year to date:
    • Site-wide: 63,670
  • Since beginning of last month:
    • Site-wide: 40,268

Copper Blocks V-ATPase Activity and SNARE Complex Formation to Inhibit Yeast Vacuole Fusion

biochemistry more details view paper
  • Downloaded 292 times
  • Download rankings, all-time:
    • Site-wide: 98,186
    • In biochemistry: 2,847
  • Year to date:
    • Site-wide: 129,728
  • Since beginning of last month:
    • Site-wide: 109,121

RobMixReg: an R package for robust, flexible and high dimensional mixture regression

bioinformatics more details view paper
  • Downloaded 270 times
  • Download rankings, all-time:
    • Site-wide: 103,451
    • In bioinformatics: 8,800
  • Year to date:
    • Site-wide: 59,791
  • Since beginning of last month:
    • Site-wide: 50,943

Reciprocal regulation of vacuolar calcium transport and V-ATPase activity, and the effects of Phosphatidylinositol 3,5-bisphosphate

biochemistry more details view paper
  • Downloaded 251 times
  • Download rankings, all-time:
    • Site-wide: 107,942
    • In biochemistry: 3,142
  • Year to date:
    • Site-wide: 67,036
  • Since beginning of last month:
    • Site-wide: 26,170

IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis

bioinformatics more details view paper
  • Downloaded 226 times
  • Download rankings, all-time:
    • Site-wide: 114,056
    • In bioinformatics: 9,458
  • Year to date:
    • Site-wide: 57,605
  • Since beginning of last month:
    • Site-wide: 39,023

Reagent-free Raman and quantitative phase imaging offer a unique morpho-molecular platform for recognition of malignancy and stages of B-cell acute lymphoblastic leukemia

bioengineering more details view paper
  • Downloaded 213 times
  • Download rankings, all-time:
    • Site-wide: 117,248
    • In bioengineering: 2,301
  • Year to date:
    • Site-wide: 26,254
  • Since beginning of last month:
    • Site-wide: 68,870

Bile acid excess impairs thermogenic function in brown adipose tissue

physiology more details view paper
  • Downloaded 208 times
  • Download rankings, all-time:
    • Site-wide: 118,554
    • In physiology: 1,239
  • Year to date:
    • Site-wide: 55,334
  • Since beginning of last month:
    • Site-wide: 77,947

Deubiquitinase UCHL1 Maintains Protein Homeostasis through PSMA7-APEH-Proteasome Axis in High-Grade Serous Ovarian Carcinoma

cancer biology more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 118,825
    • In cancer biology: 3,600
  • Year to date:
    • Site-wide: 68,998
  • Since beginning of last month:
    • Site-wide: 77,137

Dynamic signatures of lipid droplets as new markers to quantify cellular metabolic changes

biophysics more details view paper
  • Downloaded 197 times
  • Download rankings, all-time:
    • Site-wide: 121,094
    • In biophysics: 4,651
  • Year to date:
    • Site-wide: 120,369
  • Since beginning of last month:
    • Site-wide: 97,967

SSMD: A semi-supervised approach for a robust cell type identification and deconvolution of mouse transcriptomics data

bioinformatics more details view paper
  • Downloaded 190 times
  • Download rankings, all-time:
    • Site-wide: 122,930
    • In bioinformatics: 9,926
  • Year to date:
    • Site-wide: 89,207
  • Since beginning of last month:
    • Site-wide: 131,182

Structural defects caused by Acrodermatitis Enteropathica mutations in the extracellular domain account for mistrafficking and malfunction of ZIP4

biochemistry more details view paper
  • Downloaded 157 times
  • Download rankings, all-time:
    • Site-wide: 130,483
    • In biochemistry: 3,930
  • Year to date:
    • Site-wide: 131,877
  • Since beginning of last month:
    • Site-wide: 115,833

Gain control by sparse, ultra-slow glycinergic synapses

neuroscience more details view paper
  • Downloaded 156 times
  • Download rankings, all-time:
    • Site-wide: 130,678
    • In neuroscience: 19,764
  • Year to date:
    • Site-wide: 37,978
  • Since beginning of last month:
    • Site-wide: 46,945

Permissive epigenetic landscape facilitates distinct transcriptional signatures of activating transcription factor 6 in the liver

genomics more details view paper
  • Downloaded 140 times
  • Download rankings, all-time:
    • Site-wide: 134,317
    • In genomics: 7,114
  • Year to date:
    • Site-wide: 42,767
  • Since beginning of last month:
    • Site-wide: 60,475

Reactive oxygen species mediate thylakoid membrane remodeling and triacylglycerol synthesis under nitrogen starvation in the alga Chlorella sorokiniana

plant biology more details view paper
  • Downloaded 120 times
  • Download rankings, all-time:
    • Site-wide: 138,406
    • In plant biology: 3,898
  • Year to date:
    • Site-wide: 50,191
  • Since beginning of last month:
    • Site-wide: 53,259

When and why an essential popular mineral-calcium-is an effective antifungal adjuvant against the human pathogen?

microbiology more details view paper
  • Downloaded 84 times
  • Download rankings, all-time:
    • Site-wide: 144,858
    • In microbiology: 11,145
  • Year to date:
    • Site-wide: 136,196
  • Since beginning of last month:
    • Site-wide: 115,327

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