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Author: Saugat Poudel

Rankings

  • All-time downloads: 4,012 (rank: 68,799 (tie) )
  • Categories:
    • bioinformatics: 960 (rank: 18,581 (tie) )
    • microbiology: 2,334 (rank: 7,757 )
    • systems biology: 718 (rank: 7,478 (tie) )

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Preprints

Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions

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  • Downloaded 433 times
  • Download rankings, all-time:
    • Site-wide: 85,303
    • In microbiology: 5,707
  • Year to date:
    • Site-wide: 44,105
  • Since beginning of last month:
    • Site-wide: 59,283

Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators and role in key physiological responses

microbiology more details view paper
  • Downloaded 414 times
  • Download rankings, all-time:
    • Site-wide: 89,225
    • In microbiology: 6,025
  • Year to date:
    • Site-wide: 154,445
  • Since beginning of last month:
    • Site-wide: 150,658

Matrix factorization recovers consistent regulatory signals from disparate datasets

bioinformatics more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 97,429
    • In bioinformatics: 8,402
  • Year to date:
    • Site-wide: 99,052
  • Since beginning of last month:
    • Site-wide: 84,891

Pangenome analytics reveal two-component systems as conserved targets in ESKAPEE pathogens

microbiology more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 97,435
    • In microbiology: 6,709
  • Year to date:
    • Site-wide: 110,543
  • Since beginning of last month:
    • Site-wide: 148,449

Decomposition of transcriptional responses provides insights into differential antibiotic susceptibility

microbiology more details view paper
  • Downloaded 358 times
  • Download rankings, all-time:
    • Site-wide: 101,791
    • In microbiology: 7,060
  • Year to date:
    • Site-wide: 108,380
  • Since beginning of last month:
    • Site-wide: 106,550

Optimal dimensionality selection for independent component analysis of transcriptomic data

bioinformatics more details view paper
  • Downloaded 315 times
  • Download rankings, all-time:
    • Site-wide: 112,577
    • In bioinformatics: 9,329
  • Year to date:
    • Site-wide: 31,913
  • Since beginning of last month:
    • Site-wide: 41,164

Elucidating the CodY regulon in Staphylococcus aureus USA300 substrains

microbiology more details view paper
  • Downloaded 311 times
  • Download rankings, all-time:
    • Site-wide: 113,481
    • In microbiology: 8,036
  • Year to date:
    • Site-wide: 32,565
  • Since beginning of last month:
    • Site-wide: 52,308

iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning

systems biology more details view paper
  • Downloaded 293 times
  • Download rankings, all-time:
    • Site-wide: 118,285
    • In systems biology: 2,568
  • Year to date:
    • Site-wide: 122,085
  • Since beginning of last month:
    • Site-wide: 155,423

Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media

microbiology more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 122,401
    • In microbiology: 8,821
  • Year to date:
    • Site-wide: 72,548
  • Since beginning of last month:
    • Site-wide: 119,360

Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks

bioinformatics more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 124,992
    • In bioinformatics: 10,044
  • Year to date:
    • Site-wide: 40,058
  • Since beginning of last month:
    • Site-wide: 29,254

Machine learning of all Mycobacterium Tuberculosis H37Rv RNA-seq data reveals complex interplay between metabolism, stress response, and infection

systems biology more details view paper
  • Downloaded 258 times
  • Download rankings, all-time:
    • Site-wide: 127,566
    • In systems biology: 2,733
  • Year to date:
    • Site-wide: 41,979
  • Since beginning of last month:
    • Site-wide: 17,441

Machine learning uncovers a data-driven transcriptional regulatory network for the Crenarchaeal thermoacidophile Sulfolobus acidocaldarius

systems biology more details view paper
  • Downloaded 167 times
  • Download rankings, all-time:
    • Site-wide: 149,608
    • In systems biology: 3,105
  • Year to date:
    • Site-wide: 71,478
  • Since beginning of last month:
    • Site-wide: 88,754

Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media

microbiology more details view paper
  • Downloaded 164 times
  • Download rankings, all-time:
    • Site-wide: 150,264
    • In microbiology: 11,319
  • Year to date:
    • Site-wide: 152,753
  • Since beginning of last month:
    • Site-wide: 147,269

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