Author: Brandon F. Malone

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Preprints

Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2: toward universal blueprints for vaccine designs

• Downloaded 2,669 times
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  • Site-wide: 7,716
  • In bioinformatics: 731
• Year to date:
  • Site-wide: 75,614
• Since beginning of last month:
  • Site-wide: 102,132

Time-resolved cryoEM using Spotiton

• Downloaded 1,989 times
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  • Site-wide: 11,952
  • In biophysics: 243
• Year to date:
  • Site-wide: 63,592
• Since beginning of last month:
  • Site-wide: 61,154

Structural basis for helicase-polymerase coupling in the SARS-CoV-2 replication-transcription complex

• Downloaded 1,904 times
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  • Site-wide: 12,754
  • In biophysics: 269
• Year to date:
  • Site-wide: 49,392
• Since beginning of last month:
  • Site-wide: 63,449

BERTMHC: Improves MHC-peptide class II interaction prediction with transformer and multiple instance learning

• Downloaded 939 times
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  • Site-wide: 37,362
  • In bioinformatics: 4,036
• Year to date:
  • Site-wide: 45,337
• Since beginning of last month:
  • Site-wide: 63,452

Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex

• Downloaded 938 times
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  • Site-wide: 37,379
  • In biochemistry: 1,025
• Year to date:
  • Site-wide: 27,942
• Since beginning of last month:
  • Site-wide: 11,188

dom2vec: Unsupervised protein domain embeddings capture domains structure and function providing data-driven insights into collocations in domain architectures

• Downloaded 916 times
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  • Site-wide: 38,731
  • In bioinformatics: 3,928
• Year to date:
  • Site-wide: 98,596
• Since beginning of last month:
  • Site-wide: 79,019

Ensemble cryo-electron microscopy reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex

• Downloaded 809 times
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  • Site-wide: 46,492
  • In biophysics: 1,579
• Year to date:
  • Site-wide: 13,589
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  • Site-wide: 69,126

DOUBLER: Unified Representation Learning of Biological Entities and Documents for Predicting Protein–Disease Relationships

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  • Site-wide: 126,264
  • In bioinformatics: 9,661
• Year to date:
  • Site-wide: 157,109
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  • Site-wide: 166,096

Structural basis for substrate selection by the SARS-CoV-2 replicase

• Downloaded 339 times
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  • Site-wide: 126,704
  • In biophysics: None
• Year to date:
  • Site-wide: 8,903
• Since beginning of last month:
  • Site-wide: 1,108

Structural origins of Escherichia coli RNA polymerase open promoter complex stability

• Downloaded 284 times
• Download rankings, all-time:
  • Site-wide: 142,912
  • In biophysics: 5,243
• Year to date:
  • Site-wide: 92,828
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  • Site-wide: 123,930