Author: Xu Zhang

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Preprints

Genomic analyses provide new insights into the evolutionary history and reproduction of the Paleogene relictual Kingdonia (Circaeasteraceae, Ranunculales)

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Isolation and Characterization of 2019-nCoV-like Coronavirus from Malayan Pangolins

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The ORF8 Protein of SARS-CoV-2 Mediates Immune Evasion through Potently Downregulating MHC-I

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Glycopeptide antibiotic teicoplanin inhibits cell entry of SARS-CoV-2 by suppressing the proteolytic activity of cathepsin L

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Variability in the analysis of a single neuroimaging dataset by many teams

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A versatile two-step CRISPR- and RMCE-based strategy for efficient genome engineering in Drosophila

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Quantitative analysis of SARS-CoV-2 RNA from wastewater solids in communities with low COVID-19 incidence and prevalence

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SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation

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A New Gene Set Identifies Senescent Cells and Predicts Senescence-Associated Pathways Across Tissues

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3D observation of large-scale subcellular dynamics in vivo at the millisecond scale

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Single-cell RNA-seq reveals endoimmune cells in zebrafish

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Imaging chromatin interactions at sub-kilobase resolution Via Tn5-FISH

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A ribosome assembly stress response regulates transcription to maintain proteome homeostasis

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RapidAIM: A culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

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Control of mammalian brain aging by the unfolded protein response (UPR)

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MyoD is a structure organizer of 3D genome architecture in muscle cells

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Pathogenicity, tissue tropism and potential vertical transmission of SARSr-CoV-2 in Malayan pangolins

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Genome wide sequencing provides evidence of adaptation to heterogeneous environments for the ancient relictual Circaeaster agrestis (Circaeasteraceae, Ranunculales)

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DNA 5-Hydroxymethylcytosines from Cell-free Circulating DNA as Diagnostic Biomarkers for Human Cancers

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Performance of a point of care test for detecting IgM and IgG antibodies against SARS-CoV-2 and seroprevalence in blood donors and health care workers in Panama

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MetaLab 2.0 enables accurate post-translational modifications profiling in metaproteomics

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Integrated proteogenomic analysis of metastatic thoracic tumors identifies APOBEC mutagenesis and copy number alterations as drivers of proteogenomic tumor evolution and heterogeneity

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Real-time environmental monitoring of contaminants using living electronic sensors

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Growth phase-dependent responses of an in vitro gut microbiome to metformin

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Multiple expression assessments of ACE2 and TMPRSS2 SARS-CoV-2 entry molecules in the urinary tract and their associations with clinical manifestations of COVID-19

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Non-invasive Amelioration of Essential Tremor via Phase-Locked Disruption of its Temporal Coherence

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5-Hydroxymethylcytosines from Circulating Cell-free DNA as Diagnostic and Prognostic Markers for Hepatocellular Carcinoma

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A Chemoenzymatic Method for Glycoproteomic N-glycan Type Quantitation

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Cholecystokinin release triggered by presynaptic NMDA receptors produces LTP and sound-sound associative memory formation

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A general model to explain repeated turnovers of sex determination in the Salicaceae

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Modeling SARS-CoV-2 infection in vitro with a human intestine-on-chip device

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Metaproteomic responses of in vitro gut microbiomes to resistant starches: the role of resistant starch type and inter-individual variations

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Systematic transcriptomics reveals a biphasic mode of sarcomere morphogenesis in flight muscles regulated by Spalt

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Catching a resurgence: Increase in SARS-CoV-2 viral RNA identified in wastewater 48 hours before COVID-19 clinical tests and 96 hours before hospitalizations

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pepFunk, a tool for peptide-centric functional analysis in metaproteomic human gut microbiome studies

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Quantitative mass spectrometry to interrogate proteomic heterogeneity in metastatic lung adenocarcinoma and validate a novel somatic mutation CDK12-G879V

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Global proteome and phosphoproteome alterations in third generation EGFR TKI resistance reveal drug targets to circumvent resistance

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Different Incidence of Acute Kidney Injury In Adult Patients Receiving Different types Extracorporeal Membrane Oxygenation: A Meta-Analysis

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In Vitro Potent Activity of ε-poly-L-lysine against Candida albicans and the Underlying Mechanisms

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De novo assembly of trachidermus fasciatus genome by nanopore sequencing

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Deep characterization of the protein lysine acetylation in human gut microbiome and its alterations in patients with Crohn's disease

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The draft genome of the endangered, relictual plant Kingdonia uniflora (Circaeasteraceae, Ranunculales) reveals potential mechanisms and perils of evolutionary specialization

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Proteogenomic analysis unveils the HLA Class I presented immunopeptidome in melanoma and EGFR mutant lung adenocarcinoma

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An in vitro model maintaining taxon-specific functional activities of the gut microbiome

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Genomic characterization of a lumpy skin disease virus isolated in southeast China

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Studying the dynamics of the gut microbiota using metabolically stable isotopic labeling and metaproteomics.

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Comprehensive assessment of functional effects of commonly used sweeteners on ex vivo human gut microbiome

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Identification of a new orthonairovirus associated with human febrile illness in China

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A novel small molecule that induces cytotoxicity in lung cancer cells inhibits disulfide reductases GSR and TXNRD1

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CHRAC/ACF Contribute to the Repressive Ground State of Chromatin

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Insights into the drivers of radiating diversification in biodiversity hotspots using Saussurea (Asteraceae) as a case

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Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid genes

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NAD metabolism modulates mitochondrial function and inflammation and prevents progression of diabetic kidney disease

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Revealing Protein-Level Functional Redundancy in the Human Gut Microbiome using Ultra-deep Metaproteomics

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Flotillin-2 regulates EGFR activation, degradation, and cancer growth

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Targeted protein S-nitrosylation of ACE2 as potential treatment to prevent spread of SARS-CoV-2 infection

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MetaProClust-MS1: A tool for clustering metaproteomes using rapid MS1 profiling

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Parvalbumin interneurons in the nucleus accumbens regulate impairment of risk avoidance in DISC1 transgenic mice

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Understanding of the 2-oxoglutarate dehydrogenase and 2-oxoadipate dehydrogenase assembly with the E2o core relevant to a hybrid complex formation

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Exploring the microbiome-wide lysine acetylation, succinylation and propionylation in human gut microbiota

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Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis

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Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

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Examining the effects of an anti-Salmonella bacteriophage preparation, BAFASAL, on ex vivo human gut microbiome composition and function using a multi-omics approach

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Tropomyosin in mugwort cross-reacts to house dust mite, eliciting non-Th2 response in allergic rhinitis patients sensitized to house dust mite

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