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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,530 bioRxiv papers from 320,027 authors.

Author: Huanming Yang

  • Most recently observed institution: James D. Watson Institute of Genome Sciences

Rankings

  • All-time downloads: 40,875 (rank: 441 out of 319,996)
  • Categories:
    • bioinformatics: 1,689 (rank: 5,252 (tie) out of 27,758)
    • cancer biology: 3,468 (rank: 491 (tie) out of 21,127)
    • clinical trials: 763 (rank: 317 (tie) out of 1,037)
    • developmental biology: 1,835 (rank: 659 out of 12,307)
    • ecology: 538 (rank: 4,207 (tie) out of 13,125)
    • evolutionary biology: 969 (rank: 3,867 (tie) out of 17,022)
    • genetics: 2,170 (rank: 6,430 out of 31,351)
    • genomics: 19,060 (rank: 380 out of 35,691)
    • immunology: 3,118 (rank: 356 out of 15,552)
    • microbiology: 5,230 (rank: 251 out of 33,392)
    • molecular biology: 1,739 (rank: 1,095 out of 15,729)
    • synthetic biology: 296 (rank: 2,807 (tie) out of 3,270)

Downloads per author, site-wide

Preprints

Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

genomics more details view paper
  • Downloaded 5,128 times
  • Download rankings, all-time:
    • Site-wide: 478 out of 73,530
    • In genomics: 118 out of 4,879
  • Year to date:
    • Site-wide: 2,531 out of 73,530
  • Since beginning of last month:
    • Site-wide: 2,531 out of 73,530

Comprehensive analysis of immune evasion in breast cancer by single-cell RNA-seq

cancer biology more details view paper
  • Downloaded 2,788 times
  • Download rankings, all-time:
    • Site-wide: 1,500 out of 73,530
    • In cancer biology: 42 out of 2,516
  • Year to date:
    • Site-wide: 5,767 out of 73,530
  • Since beginning of last month:
    • Site-wide: 5,767 out of 73,530

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
  • Downloaded 2,321 times
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    • Site-wide: 2,099 out of 73,530
    • In genomics: 441 out of 4,879
  • Year to date:
    • Site-wide: 26,769 out of 73,530
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    • Site-wide: 26,769 out of 73,530

Chromosome level draft genomes of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), an alien invasive pest in China

genomics more details view paper
  • Downloaded 1,645 times
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    • In genomics: 693 out of 4,879
  • Year to date:
    • Site-wide: 1,502 out of 73,530
  • Since beginning of last month:
    • Site-wide: 1,502 out of 73,530

Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

genomics more details view paper
  • Downloaded 1,478 times
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    • Site-wide: 4,567 out of 73,530
    • In genomics: 813 out of 4,879
  • Year to date:
    • Site-wide: 15,834 out of 73,530
  • Since beginning of last month:
    • Site-wide: 15,834 out of 73,530

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

genomics more details view paper
  • Downloaded 1,442 times
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    • Site-wide: 4,753 out of 73,530
    • In genomics: 841 out of 4,879
  • Year to date:
    • Site-wide: 21,674 out of 73,530
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    • Site-wide: 21,674 out of 73,530

TET1 Modulates H4K16 Acetylation by Interacting with hMOF to Regulate Expression of DNA Repair Genes and Oncogenic Transformation

molecular biology more details view paper
  • Downloaded 1,409 times
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    • In molecular biology: 152 out of 2,394
  • Year to date:
    • Site-wide: 58,478 out of 73,530
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    • Site-wide: 58,478 out of 73,530

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

microbiology more details view paper
  • Downloaded 1,247 times
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    • Site-wide: 6,051 out of 73,530
    • In microbiology: 242 out of 6,001
  • Year to date:
    • Site-wide: 8,557 out of 73,530
  • Since beginning of last month:
    • Site-wide: 8,557 out of 73,530

A Single-Cell Immune Atlas of Triple Negative Breast Cancer Reveals Novel Immune Cell Subsets

immunology more details view paper
  • Downloaded 1,236 times
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    • Site-wide: 6,140 out of 73,530
    • In immunology: 104 out of 1,916
  • Year to date:
    • Site-wide: 4,828 out of 73,530
  • Since beginning of last month:
    • Site-wide: 4,828 out of 73,530

Circularization of genes and chromosome by CRISPR in human cells

genomics more details view paper
  • Downloaded 1,138 times
  • Download rankings, all-time:
    • Site-wide: 7,057 out of 73,530
    • In genomics: 1,131 out of 4,879
  • Year to date:
    • Site-wide: 39,226 out of 73,530
  • Since beginning of last month:
    • Site-wide: 39,226 out of 73,530

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

developmental biology more details view paper
  • Downloaded 1,125 times
  • Download rankings, all-time:
    • Site-wide: 7,196 out of 73,530
    • In developmental biology: 150 out of 2,209
  • Year to date:
    • Site-wide: 17,312 out of 73,530
  • Since beginning of last month:
    • Site-wide: 17,312 out of 73,530

A new massively parallel nanoball sequencing platform for whole exome research

genomics more details view paper
  • Downloaded 1,045 times
  • Download rankings, all-time:
    • Site-wide: 8,145 out of 73,530
    • In genomics: 1,276 out of 4,879
  • Year to date:
    • Site-wide: 9,299 out of 73,530
  • Since beginning of last month:
    • Site-wide: 9,299 out of 73,530

PIRD: Pan immune repertoire database

immunology more details view paper
  • Downloaded 986 times
  • Download rankings, all-time:
    • Site-wide: 8,925 out of 73,530
    • In immunology: 155 out of 1,916
  • Year to date:
    • Site-wide: 19,026 out of 73,530
  • Since beginning of last month:
    • Site-wide: 19,026 out of 73,530

Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba

evolutionary biology more details view paper
  • Downloaded 969 times
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    • Site-wide: 9,223 out of 73,530
    • In evolutionary biology: 562 out of 4,749
  • Year to date:
    • Site-wide: 12,887 out of 73,530
  • Since beginning of last month:
    • Site-wide: 12,887 out of 73,530

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

microbiology more details view paper
  • Downloaded 921 times
  • Download rankings, all-time:
    • Site-wide: 9,978 out of 73,530
    • In microbiology: 445 out of 6,001
  • Year to date:
    • Site-wide: 10,398 out of 73,530
  • Since beginning of last month:
    • Site-wide: 10,398 out of 73,530

A Complete Public Domain Family Genomics Dataset

genomics more details view paper
  • Downloaded 879 times
  • Download rankings, all-time:
    • Site-wide: 10,732 out of 73,530
    • In genomics: 1,567 out of 4,879
  • Year to date:
    • Site-wide: 46,264 out of 73,530
  • Since beginning of last month:
    • Site-wide: 46,264 out of 73,530

Life history recorded in the vagino-cervical microbiome

microbiology more details view paper
  • Downloaded 874 times
  • Download rankings, all-time:
    • Site-wide: 10,850 out of 73,530
    • In microbiology: 491 out of 6,001
  • Year to date:
    • Site-wide: 8,761 out of 73,530
  • Since beginning of last month:
    • Site-wide: 8,761 out of 73,530

Fecal microbiota transplantation brings about bacterial strain displacement in patients with inflammatory bowel diseases

clinical trials more details view paper
  • Downloaded 763 times
  • Download rankings, all-time:
    • Site-wide: 13,293 out of 73,530
    • In clinical trials: 24 out of 99
  • Year to date:
    • Site-wide: 12,798 out of 73,530
  • Since beginning of last month:
    • Site-wide: 12,798 out of 73,530

Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

genomics more details view paper
  • Downloaded 757 times
  • Download rankings, all-time:
    • Site-wide: 13,438 out of 73,530
    • In genomics: 1,811 out of 4,879
  • Year to date:
    • Site-wide: 7,292 out of 73,530
  • Since beginning of last month:
    • Site-wide: 7,292 out of 73,530

Single-cell RNA-seq reveals distinct dynamic behavior of sex chromosomes during early human embryogenesis

developmental biology more details view paper
  • Downloaded 710 times
  • Download rankings, all-time:
    • Site-wide: 14,801 out of 73,530
    • In developmental biology: 341 out of 2,209
  • Year to date:
    • Site-wide: 6,644 out of 73,530
  • Since beginning of last month:
    • Site-wide: 6,644 out of 73,530

LFMD: detecting low-frequency mutations in high-depth genome sequencing data without molecular tags

bioinformatics more details view paper
  • Downloaded 687 times
  • Download rankings, all-time:
    • Site-wide: 15,504 out of 73,530
    • In bioinformatics: 2,424 out of 7,162
  • Year to date:
    • Site-wide: 7,211 out of 73,530
  • Since beginning of last month:
    • Site-wide: 7,211 out of 73,530

Gene Panel Sequencing in a Chinese High-risk Breast Cancer Cohort

cancer biology more details view paper
  • Downloaded 680 times
  • Download rankings, all-time:
    • Site-wide: 15,738 out of 73,530
    • In cancer biology: 476 out of 2,516
  • Year to date:
    • Site-wide: 17,552 out of 73,530
  • Since beginning of last month:
    • Site-wide: 17,552 out of 73,530

Integrated Analysis Revealed Hub Genes in Breast Cancer

bioinformatics more details view paper
  • Downloaded 674 times
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    • Site-wide: 15,933 out of 73,530
    • In bioinformatics: 2,471 out of 7,162
  • Year to date:
    • Site-wide: 43,673 out of 73,530
  • Since beginning of last month:
    • Site-wide: 43,673 out of 73,530

The landscape of somatic mutation in sporadic Chinese colorectal cancer

genomics more details view paper
  • Downloaded 642 times
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    • Site-wide: 17,119 out of 73,530
    • In genomics: 2,118 out of 4,879
  • Year to date:
    • Site-wide: 37,869 out of 73,530
  • Since beginning of last month:
    • Site-wide: 37,869 out of 73,530

Age-dependent sexual dimorphism in the adult human gut microbiota

genomics more details view paper
  • Downloaded 608 times
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    • Site-wide: 18,534 out of 73,530
    • In genomics: 2,230 out of 4,879
  • Year to date:
    • Site-wide: 54,370 out of 73,530
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    • Site-wide: 54,370 out of 73,530

Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

genomics more details view paper
  • Downloaded 588 times
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    • Site-wide: 19,414 out of 73,530
    • In genomics: 2,298 out of 4,879
  • Year to date:
    • Site-wide: 39,929 out of 73,530
  • Since beginning of last month:
    • Site-wide: 39,929 out of 73,530

Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa

microbiology more details view paper
  • Downloaded 555 times
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    • Site-wide: 20,970 out of 73,530
    • In microbiology: 1,129 out of 6,001
  • Year to date:
    • Site-wide: 11,056 out of 73,530
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    • Site-wide: 11,056 out of 73,530

Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

genetics more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 21,793 out of 73,530
    • In genetics: 1,444 out of 4,034
  • Year to date:
    • Site-wide: 12,214 out of 73,530
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    • Site-wide: 12,214 out of 73,530

The mitochondrial DNA content can not predict the embryo viability

ecology more details view paper
  • Downloaded 538 times
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    • Site-wide: 21,848 out of 73,530
    • In ecology: 641 out of 3,192
  • Year to date:
    • Site-wide: 19,622 out of 73,530
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    • Site-wide: 19,622 out of 73,530

Identification of gut microbiome markers for schizophrenia delineates a potential role of Streptococcus

microbiology more details view paper
  • Downloaded 515 times
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    • Site-wide: 23,155 out of 73,530
    • In microbiology: 1,270 out of 6,001
  • Year to date:
    • Site-wide: 6,877 out of 73,530
  • Since beginning of last month:
    • Site-wide: 6,877 out of 73,530

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

genomics more details view paper
  • Downloaded 514 times
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    • Site-wide: 23,192 out of 73,530
    • In genomics: 2,570 out of 4,879
  • Year to date:
    • Site-wide: 18,851 out of 73,530
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    • Site-wide: 18,851 out of 73,530

Identification of Variable and Joining germline genes and alleles for Rhesus macaque from B-cell receptor repertoires

immunology more details view paper
  • Downloaded 469 times
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    • Site-wide: 25,977 out of 73,530
    • In immunology: 526 out of 1,916
  • Year to date:
    • Site-wide: 37,165 out of 73,530
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    • Site-wide: 37,165 out of 73,530

Calorie restriction intervention induces enterotype-associated BMI loss in nonobese individuals

microbiology more details view paper
  • Downloaded 408 times
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    • Site-wide: 30,477 out of 73,530
    • In microbiology: 1,834 out of 6,001
  • Year to date:
    • Site-wide: 26,794 out of 73,530
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    • Site-wide: 26,794 out of 73,530

Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

genomics more details view paper
  • Downloaded 372 times
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    • In genomics: 3,255 out of 4,879
  • Year to date:
    • Site-wide: 9,981 out of 73,530
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    • Site-wide: 9,981 out of 73,530

Selective targeting of an oncogenic KRAS mutant allele by CRISPR/Cas9 induces efficient tumor regression

genetics more details view paper
  • Downloaded 359 times
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    • Site-wide: 34,873 out of 73,530
    • In genetics: 2,148 out of 4,034
  • Year to date:
    • Site-wide: 8,755 out of 73,530
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    • Site-wide: 8,755 out of 73,530

PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA

molecular biology more details view paper
  • Downloaded 330 times
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    • Site-wide: 37,808 out of 73,530
    • In molecular biology: 1,146 out of 2,394
  • Year to date:
    • Site-wide: 26,096 out of 73,530
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Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

genetics more details view paper
  • Downloaded 327 times
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    • Site-wide: 38,152 out of 73,530
    • In genetics: 2,322 out of 4,034
  • Year to date:
    • Site-wide: 42,844 out of 73,530
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    • Site-wide: 42,844 out of 73,530

Towards Practical and Robust DNA-based Data Archiving by Codec System Named 'Yin-Yang'

synthetic biology more details view paper
  • Downloaded 296 times
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    • Site-wide: 41,570 out of 73,530
    • In synthetic biology: 566 out of 704
  • Year to date:
    • Site-wide: 8,387 out of 73,530
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    • Site-wide: 8,387 out of 73,530

Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

genetics more details view paper
  • Downloaded 255 times
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    • Site-wide: 46,929 out of 73,530
    • In genetics: 2,790 out of 4,034
  • Year to date:
    • Site-wide: 36,938 out of 73,530
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    • Site-wide: 36,938 out of 73,530

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

microbiology more details view paper
  • Downloaded 255 times
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    • Site-wide: 46,816 out of 73,530
    • In microbiology: 3,209 out of 6,001
  • Year to date:
    • Site-wide: 52,290 out of 73,530
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    • Site-wide: 52,290 out of 73,530

Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

microbiology more details view paper
  • Downloaded 241 times
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    • Site-wide: 48,779 out of 73,530
    • In microbiology: 3,376 out of 6,001
  • Year to date:
    • Site-wide: 40,455 out of 73,530
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    • Site-wide: 40,455 out of 73,530

M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

genetics more details view paper
  • Downloaded 234 times
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    • Site-wide: 49,671 out of 73,530
    • In genetics: 2,939 out of 4,034
  • Year to date:
    • Site-wide: 16,084 out of 73,530
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    • Site-wide: 16,084 out of 73,530

Intratumor Heterogeneity and Evolution of Colorectal Cancer

genetics more details view paper
  • Downloaded 233 times
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    • Site-wide: 49,919 out of 73,530
    • In genetics: 2,944 out of 4,034
  • Year to date:
    • Site-wide: 1,332 out of 73,530
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    • Site-wide: 1,332 out of 73,530

High-quality genome assembly and high-density genetic map of asparagus bean

genomics more details view paper
  • Downloaded 227 times
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    • Site-wide: 50,744 out of 73,530
    • In genomics: 4,091 out of 4,879
  • Year to date:
    • Site-wide: 51,296 out of 73,530
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    • Site-wide: 51,296 out of 73,530

New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

genetics more details view paper
  • Downloaded 223 times
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    • Site-wide: 51,304 out of 73,530
    • In genetics: 3,035 out of 4,034
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    • Site-wide: 52,755 out of 73,530

The landscape and diagnostic potential of T and B cell repertoire in Immunoglobulin A Nephropathy

immunology more details view paper
  • Downloaded 222 times
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    • Site-wide: 51,391 out of 73,530
    • In immunology: 1,204 out of 1,916
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    • Site-wide: 38,469 out of 73,530

The Urinary Microbiota in Relation to the Reproductive Tract Microbiota

microbiology more details view paper
  • Downloaded 214 times
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    • Site-wide: 52,600 out of 73,530
    • In microbiology: 3,759 out of 6,001
  • Year to date:
    • Site-wide: 48,511 out of 73,530
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    • Site-wide: 48,511 out of 73,530

Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

immunology more details view paper
  • Downloaded 205 times
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    • Site-wide: 53,923 out of 73,530
    • In immunology: 1,283 out of 1,916
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    • Site-wide: 34,601 out of 73,530

SOAPTyping: an open-source and cross-platform tool for Sanger sequence-based typing for HLA class I and II alleles

bioinformatics more details view paper
  • Downloaded 166 times
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    • In bioinformatics: 6,312 out of 7,162
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    • Site-wide: 21,461 out of 73,530

WinnerTakeAlmostAll: A parsimony approach integrating multi-targets improves marker gene profiling

bioinformatics more details view paper
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    • In bioinformatics: 6,348 out of 7,162
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    • Site-wide: 57,568 out of 73,530

Draft Genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

genomics more details view paper
  • Downloaded 142 times
  • Download rankings, all-time:
    • Site-wide: 63,639 out of 73,530
    • In genomics: 4,584 out of 4,879
  • Year to date:
    • Site-wide: 24,192 out of 73,530
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    • Site-wide: 24,192 out of 73,530

Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

genomics more details view paper
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    • In genomics: 4,620 out of 4,879
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