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Author: Kishwar Shafin

Rankings

  • All-time downloads: 48,291 (rank: 3,385 )
  • Categories:
    • bioinformatics: 12,835 (rank: 570 (tie) )
    • genomics: 35,456 (rank: 304 )

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Preprints

Complete genomic and epigenetic maps of human centromeres

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A complete reference genome improves analysis of human genetic variation

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Merfin: improved variant filtering and polishing via k-mer validation

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The complete sequence of a human genome

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  • Downloaded 33,007 times
  • Download rankings, all-time:
    • Site-wide: 217
    • In genomics: 10
  • Year to date:
    • Site-wide: 40
  • Since beginning of last month:
    • Site-wide: 8

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 9,007 times
  • Download rankings, all-time:
    • Site-wide: 1,054
    • In bioinformatics: 57
  • Year to date:
    • Site-wide: 5,480
  • Since beginning of last month:
    • Site-wide: 8,862

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioinformatics more details view paper
  • Downloaded 2,266 times
  • Download rankings, all-time:
    • Site-wide: 7,124
    • In bioinformatics: 807
  • Year to date:
    • Site-wide: 1,845
  • Since beginning of last month:
    • Site-wide: 1,996

Benchmarking challenging small variants with linked and long reads

genomics more details view paper
  • Downloaded 2,040 times
  • Download rankings, all-time:
    • Site-wide: 8,268
    • In genomics: 864
  • Year to date:
    • Site-wide: 3,161
  • Since beginning of last month:
    • Site-wide: 3,144

Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks

bioinformatics more details view paper
  • Downloaded 1,562 times
  • Download rankings, all-time:
    • Site-wide: 12,286
    • In bioinformatics: 1,430
  • Year to date:
    • Site-wide: 1,514
  • Since beginning of last month:
    • Site-wide: 1,574

Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

genomics more details view paper
  • Downloaded 409 times
  • Download rankings, all-time:
    • Site-wide: 73,671
    • In genomics: 5,009
  • Year to date:
    • Site-wide: 10,325
  • Since beginning of last month:
    • Site-wide: 1,252

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