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Author: Philippe Lemey

  • ORCiD: http://orcid.org/0000-0003-2826-5353
  • Most recently observed institution: Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory for Clinical and Epidemiological Virology, KU Leuven - University of Leuven, Leuven, Belgium

Rankings

  • All-time downloads: 79,849 (rank: 2,198 )
  • Categories:
    • bioinformatics: 796 (rank: 20,650 (tie) )
    • ecology: 314 (rank: 15,592 (tie) )
    • epidemiology: 7,951 (rank: 2,112 )
    • evolutionary biology: 30,155 (rank: 48 )
    • genetics: 27,066 (rank: 266 (tie) )
    • infectious diseases: 10,233 (rank: 5,667 )
    • microbiology: 3,334 (rank: 5,124 (tie) )

Downloads per author, site-wide

Preprints

The emergence of SARS-CoV-2 in Europe and the US

genetics more details view paper
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    • Site-wide: 308
    • In genetics: 3
  • Year to date:
    • Site-wide: 1,996
  • Since beginning of last month:
    • Site-wide: 2,853

Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

evolutionary biology more details view paper
  • Downloaded 17,112 times
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    • Site-wide: 519
    • In evolutionary biology: 8
  • Year to date:
    • Site-wide: 2,692
  • Since beginning of last month:
    • Site-wide: 7,214

Evolution and epidemic spread of SARS-CoV-2 in Brazil

infectious diseases more details view paper
  • Downloaded 6,068 times
  • Download rankings, all-time:
    • Site-wide: 1,975
    • In infectious diseases: 525
  • Year to date:
    • Site-wide: 24,745
  • Since beginning of last month:
    • Site-wide: 45,849

Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil

epidemiology more details view paper
  • Downloaded 4,353 times
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    • Site-wide: 3,105
    • In epidemiology: 332
  • Year to date:
    • Site-wide: 635
  • Since beginning of last month:
    • Site-wide: 4,139

The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape

infectious diseases more details view paper
  • Downloaded 4,165 times
  • Download rankings, all-time:
    • Site-wide: 3,297
    • In infectious diseases: 720
  • Year to date:
    • Site-wide: 667
  • Since beginning of last month:
    • Site-wide: 595

The history of measles: from a 1912 genome to an antique origin

evolutionary biology more details view paper
  • Downloaded 3,363 times
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    • Site-wide: 4,444
    • In evolutionary biology: 81
  • Year to date:
    • Site-wide: 7,223
  • Since beginning of last month:
    • Site-wide: 11,829

Archival influenza virus genomes from Europe reveal genomic and phenotypic variability during the 1918 pandemic

microbiology more details view paper
  • Downloaded 3,125 times
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    • Site-wide: 4,917
    • In microbiology: 330
  • Year to date:
    • Site-wide: 943
  • Since beginning of last month:
    • Site-wide: 12,716

Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen

evolutionary biology more details view paper
  • Downloaded 3,043 times
  • Download rankings, all-time:
    • Site-wide: 5,114
    • In evolutionary biology: 100
  • Year to date:
    • Site-wide: 7,735
  • Since beginning of last month:
    • Site-wide: 21,621

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

epidemiology more details view paper
  • Downloaded 2,518 times
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    • Site-wide: 6,753
    • In epidemiology: 580
  • Year to date:
    • Site-wide: 70,920
  • Since beginning of last month:
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A near-full-length HIV-1 genome from 1966 recovered from formalin-fixed paraffin-embedded tissue

evolutionary biology more details view paper
  • Downloaded 2,451 times
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    • Site-wide: 7,027
    • In evolutionary biology: 157
  • Year to date:
    • Site-wide: 83,380
  • Since beginning of last month:
    • Site-wide: 125,786

Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study.

evolutionary biology more details view paper
  • Downloaded 1,649 times
  • Download rankings, all-time:
    • Site-wide: 12,534
    • In evolutionary biology: 380
  • Year to date:
    • Site-wide: 44,777
  • Since beginning of last month:
    • Site-wide: 52,883

Temporal signal and the phylodynamic threshold of SARS-CoV-2

evolutionary biology more details view paper
  • Downloaded 1,135 times
  • Download rankings, all-time:
    • Site-wide: 21,974
    • In evolutionary biology: 837
  • Year to date:
    • Site-wide: 44,788
  • Since beginning of last month:
    • Site-wide: 114,175

Phylogeographic and phylodynamic approaches to epidemiological hypothesis testing

evolutionary biology more details view paper
  • Downloaded 1,110 times
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    • Site-wide: 22,678
    • In evolutionary biology: 885
  • Year to date:
    • Site-wide: 43,440
  • Since beginning of last month:
    • Site-wide: 53,389

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

epidemiology more details view paper
  • Downloaded 1,080 times
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    • Site-wide: 23,614
    • In epidemiology: 1,418
  • Year to date:
    • Site-wide: 134,959
  • Since beginning of last month:
    • Site-wide: 124,030

Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations

bioinformatics more details view paper
  • Downloaded 796 times
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    • Site-wide: 36,744
    • In bioinformatics: 3,961
  • Year to date:
    • Site-wide: 78,172
  • Since beginning of last month:
    • Site-wide: 150,419

nosoi: a stochastic agent-based transmission chain simulation framework in R

ecology more details view paper
  • Downloaded 314 times
  • Download rankings, all-time:
    • Site-wide: 103,256
    • In ecology: 3,083
  • Year to date:
    • Site-wide: 135,649
  • Since beginning of last month:
    • Site-wide: 117,685

Unravelling the evolutionary relationships of hepaciviruses within and across rodent hosts

evolutionary biology more details view paper
  • Downloaded 292 times
  • Download rankings, all-time:
    • Site-wide: 108,679
    • In evolutionary biology: 5,430
  • Year to date:
    • Site-wide: 55,017
  • Since beginning of last month:
    • Site-wide: 53,394

Predicting the evolution of Lassa Virus endemic area and population at risk over the next decades

microbiology more details view paper
  • Downloaded 209 times
  • Download rankings, all-time:
    • Site-wide: 130,259
    • In microbiology: 9,587
  • Year to date:
    • Site-wide: 41,599
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    • Site-wide: 3,020

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