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Author: Philippe Lemey

Rankings

  • All-time downloads: 45,207 (rank: 803 out of 384,729)
  • Categories:
    • ecology: 223 (rank: 11,512 (tie) out of 16,527)
    • epidemiology: 3,259 (rank: 161 (tie) out of 9,543)
    • evolutionary biology: 19,575 (rank: 55 out of 19,700)
    • genetics: 22,150 (rank: 306 (tie) out of 35,563)

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Preprints

Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations

bioinformatics more details view paper

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The emergence of SARS-CoV-2 in Europe and the US

genetics more details view paper
  • Downloaded 22,150 times
  • Download rankings, all-time:
    • Site-wide: 65 out of 89,846
    • In genetics: 4 out of 4,637
  • Year to date:
    • Site-wide: 36 out of 89,846
  • Since beginning of last month:
    • Site-wide: 26 out of 89,846

Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

evolutionary biology more details view paper
  • Downloaded 13,036 times
  • Download rankings, all-time:
    • Site-wide: 154 out of 89,846
    • In evolutionary biology: 6 out of 5,489
  • Year to date:
    • Site-wide: 68 out of 89,846
  • Since beginning of last month:
    • Site-wide: 105 out of 89,846

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

epidemiology more details view paper
  • Downloaded 2,308 times
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    • Site-wide: 2,913 out of 89,846
    • In epidemiology: 22 out of 1,556
  • Year to date:
    • Site-wide: 20,541 out of 89,846
  • Since beginning of last month:
    • Site-wide: 32,473 out of 89,846

A near-full-length HIV-1 genome from 1966 recovered from formalin-fixed paraffin-embedded tissue

evolutionary biology more details view paper
  • Downloaded 2,213 times
  • Download rankings, all-time:
    • Site-wide: 3,111 out of 89,846
    • In evolutionary biology: 117 out of 5,489
  • Year to date:
    • Site-wide: 8,616 out of 89,846
  • Since beginning of last month:
    • Site-wide: 12,287 out of 89,846

The history of measles: from a 1912 genome to an antique origin

evolutionary biology more details view paper
  • Downloaded 2,167 times
  • Download rankings, all-time:
    • Site-wide: 3,223 out of 89,846
    • In evolutionary biology: 127 out of 5,489
  • Year to date:
    • Site-wide: 668 out of 89,846
  • Since beginning of last month:
    • Site-wide: 1,170 out of 89,846

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

epidemiology more details view paper
  • Downloaded 951 times
  • Download rankings, all-time:
    • Site-wide: 12,514 out of 89,846
    • In epidemiology: 127 out of 1,556
  • Year to date:
    • Site-wide: 37,911 out of 89,846
  • Since beginning of last month:
    • Site-wide: 40,850 out of 89,846

Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study.

evolutionary biology more details view paper
  • Downloaded 840 times
  • Download rankings, all-time:
    • Site-wide: 15,190 out of 89,846
    • In evolutionary biology: 923 out of 5,489
  • Year to date:
    • Site-wide: 1,924 out of 89,846
  • Since beginning of last month:
    • Site-wide: 245 out of 89,846

Phylogeographic and phylodynamic approaches to epidemiological hypothesis testing

evolutionary biology more details view paper
  • Downloaded 682 times
  • Download rankings, all-time:
    • Site-wide: 20,830 out of 89,846
    • In evolutionary biology: 1,342 out of 5,489
  • Year to date:
    • Site-wide: 6,630 out of 89,846
  • Since beginning of last month:
    • Site-wide: 9,242 out of 89,846

Temporal signal and the phylodynamic threshold of SARS-CoV-2

evolutionary biology more details view paper
  • Downloaded 637 times
  • Download rankings, all-time:
    • Site-wide: 23,000 out of 89,846
    • In evolutionary biology: 1,506 out of 5,489
  • Year to date:
    • Site-wide: 2,886 out of 89,846
  • Since beginning of last month:
    • Site-wide: 2,413 out of 89,846

nosoi: a stochastic agent-based transmission chain simulation framework in R

ecology more details view paper
  • Downloaded 223 times
  • Download rankings, all-time:
    • Site-wide: 65,823 out of 89,846
    • In ecology: 2,420 out of 3,943
  • Year to date:
    • Site-wide: 14,412 out of 89,846
  • Since beginning of last month:
    • Site-wide: 21,565 out of 89,846

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