Author: Richard H. Scheuermann

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Preprints

Negligible impact of SARS-CoV-2 variants on CD4+ and CD8+ T cell reactivity in COVID-19 exposed donors and vaccinees.

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  • Site-wide: 338
  • In immunology: 19
• Year to date:
  • Site-wide: 1,295
• Since beginning of last month:
  • Site-wide: 2,918

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

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  • Site-wide: 1,933
  • In neuroscience: 87
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  • Site-wide: 11,272

Conserved cell types with divergent features between human and mouse cortex

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  • Site-wide: 2,142
  • In neuroscience: 95
• Year to date:
  • Site-wide: 12,341
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Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

• Downloaded 4,841 times
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  • Site-wide: 3,296
  • In immunology: 124
• Year to date:
  • Site-wide: 74,631
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  • Site-wide: 70,616

Equivalent high-resolution identification of neuronal cell types with single-nucleus and single-cell RNA-sequencing

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  • Site-wide: 4,164
  • In neuroscience: 288
• Year to date:
  • Site-wide: 54,785
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  • Site-wide: 43,031

Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type

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  • Site-wide: 5,670
  • In neuroscience: 414
• Year to date:
  • Site-wide: 154,601
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  • Site-wide: 176,758

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

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  • Site-wide: 16,609
  • In neuroscience: 1,672
• Year to date:
  • Site-wide: 139,864
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  • Site-wide: 162,968

Magnitude and breadth of neutralizing antibody responses elicited by SARS-CoV-2 infection or vaccination

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  • Site-wide: 27,870
  • In infectious diseases: 2,862
• Year to date:
  • Site-wide: 1,355
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  • Site-wide: 32,152

Contemporary circulating enterovirus D68 strains show differential viral entry and replication in human neuronal cells

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  • In microbiology: 2,370
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  • Site-wide: 93,026

Big data and single cell transcriptomics: implications for ontological representation

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  • Site-wide: 44,146
  • In bioinformatics: 4,306
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  • Site-wide: 176,099
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Cell type matching in single-cell RNA-sequencing data using FR-Match

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  • Site-wide: 57,868
  • In bioinformatics: 6,197
• Year to date:
  • Site-wide: 16,771
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  • Site-wide: 20,505

NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing

• Downloaded 634 times
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  • Site-wide: 65,318
  • In bioinformatics: 6,280
• Year to date:
  • Site-wide: 56,762
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  • Site-wide: 73,861

Bayesian Trees for Automated Cytometry Data Analysis

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  • Site-wide: 68,922
  • In bioinformatics: 6,161
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  • Site-wide: 164,758
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  • Site-wide: 146,795

DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

• Downloaded 579 times
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  • Site-wide: 73,456
  • In bioinformatics: 6,767
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  • Site-wide: 96,854
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  • Site-wide: 71,778

Reference-based cell type matching of spatial transcriptomics data

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  • Site-wide: 83,520
  • In bioinformatics: None
• Year to date:
  • Site-wide: 4,646
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  • Site-wide: 1,723

FR-Match: Robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test

• Downloaded 492 times
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  • Site-wide: 89,146
  • In bioinformatics: 7,508
• Year to date:
  • Site-wide: 152,096
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  • Site-wide: 150,878

Machine learning-based single cell and integrative analysis reveals that baseline mDC predisposition predicts protective Hepatitis B vaccine response

• Downloaded 425 times
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  • Site-wide: 104,135
  • In allergy and immunology: 220
• Year to date:
  • Site-wide: 55,870
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  • Site-wide: 28,445

A system-view of B. pertussis booster vaccine responses in adults primed with whole-cell vs. acellular vaccine in infancy

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  • Site-wide: 123,581
  • In systems biology: 2,519
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  • Site-wide: 123,951
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  • Site-wide: 126,833

FastMix: A Versatile Multi-Omics Data Integration Pipeline for Cell Type-Specific Biomarker Inference

• Downloaded 266 times
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  • Site-wide: 148,253
  • In allergy and immunology: 269
• Year to date:
  • Site-wide: 57,313
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  • Site-wide: 38,533

Brain Data Standards Ontology: A data-driven ontology of transcriptomically defined cell types in the primary motor cortex

• Downloaded 176 times
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  • Site-wide: 172,391
  • In neuroscience: 24,760
• Year to date:
  • Site-wide: 69,482
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  • Site-wide: 82,271

Genetic Variation and Disease Severity of Respiratory Syncytial Viruses

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  • Site-wide: 186,731
  • In microbiology: None
• Year to date:
  • Site-wide: 50,966
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  • Site-wide: 121,288