Rxivist logo

Author: Sebastian Funk

Rankings

  • All-time downloads: 143,557 (rank: 926 )
  • Categories:
    • bioinformatics: 149 (rank: 46,214 (tie) )
    • ecology: 7,758 (rank: 166 (tie) )
    • epidemiology: 85,552 (rank: 248 )
    • infectious diseases: 46,052 (rank: 1,460 )
    • public and global health: 4,046 (rank: 1,482 (tie) )

Downloads per author, site-wide

Preprints

Estimation of the test to test distribution as a proxy for generation interval distribution for the Omicron variant in England

epidemiology more details view paper

No download data for this paper yet.

The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia

epidemiology more details view paper
  • Downloaded 31,120 times
  • Download rankings, all-time:
    • Site-wide: 298
    • In epidemiology: 62
  • Year to date:
    • Site-wide: 2,813
  • Since beginning of last month:
    • Site-wide: 1,906

Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreak

infectious diseases more details view paper
  • Downloaded 24,606 times
  • Download rankings, all-time:
    • Site-wide: 389
    • In infectious diseases: 145
  • Year to date:
    • Site-wide: 7,604
  • Since beginning of last month:
    • Site-wide: 9,059

Early dynamics of transmission and control of 2019-nCoV: a mathematical modelling study

infectious diseases more details view paper
  • Downloaded 17,070 times
  • Download rankings, all-time:
    • Site-wide: 588
    • In infectious diseases: 224
  • Year to date:
    • Site-wide: 22,540
  • Since beginning of last month:
    • Site-wide: 9,619

Estimated transmissibility and severity of novel SARS-CoV-2 Variant of Concern 202012/01 in England

epidemiology more details view paper
  • Downloaded 12,601 times
  • Download rankings, all-time:
    • Site-wide: 852
    • In epidemiology: 133
  • Year to date:
    • Site-wide: 1,702
  • Since beginning of last month:
    • Site-wide: 1,455

Inferring the number of COVID-19 cases from recently reported deaths

epidemiology more details view paper
  • Downloaded 9,251 times
  • Download rankings, all-time:
    • Site-wide: 1,256
    • In epidemiology: 170
  • Year to date:
    • Site-wide: 44,435
  • Since beginning of last month:
    • Site-wide: 22,284

Practical considerations for measuring the effective reproductive number, Rt

epidemiology more details view paper
  • Downloaded 8,315 times
  • Download rankings, all-time:
    • Site-wide: 1,444
    • In epidemiology: 195
  • Year to date:
    • Site-wide: 4,903
  • Since beginning of last month:
    • Site-wide: 7,146

Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the US

epidemiology more details view paper
  • Downloaded 4,068 times
  • Download rankings, all-time:
    • Site-wide: 3,733
    • In epidemiology: 396
  • Year to date:
    • Site-wide: 616
  • Since beginning of last month:
    • Site-wide: 1,111

Feasibility of controlling 2019-nCoV outbreaks by isolation of cases and contacts

public and global health more details view paper
  • Downloaded 4,046 times
  • Download rankings, all-time:
    • Site-wide: 3,759
    • In public and global health: 130
  • Year to date:
    • Site-wide: 25,178
  • Since beginning of last month:
    • Site-wide: 39,668

Transmission dynamics of Zika virus in island populations: a modelling analysis of the 2013-14 French Polynesia outbreak

ecology more details view paper
  • Downloaded 3,977 times
  • Download rankings, all-time:
    • Site-wide: 3,845
    • In ecology: 23
  • Year to date:
    • Site-wide: 114,525
  • Since beginning of last month:
    • Site-wide: 121,265

Comparative analysis of dengue and Zika outbreaks reveals differences by setting and virus

ecology more details view paper
  • Downloaded 3,781 times
  • Download rankings, all-time:
    • Site-wide: 4,126
    • In ecology: 31
  • Year to date:
    • Site-wide: 82,789
  • Since beginning of last month:
    • Site-wide: 122,619

Genomic reconstruction of the SARS-CoV-2 epidemic in England

epidemiology more details view paper
  • Downloaded 2,317 times
  • Download rankings, all-time:
    • Site-wide: 8,376
    • In epidemiology: 693
  • Year to date:
    • Site-wide: 24,640
  • Since beginning of last month:
    • Site-wide: 13,312

SOCRATES: An online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19

epidemiology more details view paper
  • Downloaded 2,154 times
  • Download rankings, all-time:
    • Site-wide: 9,291
    • In epidemiology: 763
  • Year to date:
    • Site-wide: 89,075
  • Since beginning of last month:
    • Site-wide: 43,609

Combining serological and contact data to derive target immunity levels for achieving and maintaining measles elimination

epidemiology more details view paper
  • Downloaded 1,493 times
  • Download rankings, all-time:
    • Site-wide: 16,125
    • In epidemiology: 1,123
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 66,673

Bias correction methods for test-negative designs in the presence of misclassification

epidemiology more details view paper
  • Downloaded 1,365 times
  • Download rankings, all-time:
    • Site-wide: 18,469
    • In epidemiology: 1,233
  • Year to date:
    • Site-wide: 98,166
  • Since beginning of last month:
    • Site-wide: 55,999

Benefit-risk analysis of health benefits of routine childhood immunisation against the excess risk of SARS-CoV-2 infections during the Covid-19 pandemic in Africa

epidemiology more details view paper
  • Downloaded 1,352 times
  • Download rankings, all-time:
    • Site-wide: 18,746
    • In epidemiology: 1,250
  • Year to date:
    • Site-wide: 22,940
  • Since beginning of last month:
    • Site-wide: 25,420

Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area Region of Sierra Leone, 2014-15

epidemiology more details view paper
  • Downloaded 1,289 times
  • Download rankings, all-time:
    • Site-wide: 20,143
    • In epidemiology: 1,314
  • Year to date:
    • Site-wide: 79,440
  • Since beginning of last month:
    • Site-wide: 94,506

The contribution of asymptomatic SARS-CoV-2 infections to transmission - a model-based analysis of the Diamond Princess outbreak

infectious diseases more details view paper
  • Downloaded 1,107 times
  • Download rankings, all-time:
    • Site-wide: 25,400
    • In infectious diseases: 2,432
  • Year to date:
    • Site-wide: 15,408
  • Since beginning of last month:
    • Site-wide: 43,824

Short-term forecasts to inform the response to the COVID-19 epidemic in the UK

epidemiology more details view paper
  • Downloaded 1,033 times
  • Download rankings, all-time:
    • Site-wide: 28,196
    • In epidemiology: 1,638
  • Year to date:
    • Site-wide: 91,350
  • Since beginning of last month:
    • Site-wide: 20,529

Short-term forecasting of COVID-19 in Germany and Poland during the second wave - a preregistered study

epidemiology more details view paper
  • Downloaded 1,003 times
  • Download rankings, all-time:
    • Site-wide: 29,452
    • In epidemiology: 1,681
  • Year to date:
    • Site-wide: 14,794
  • Since beginning of last month:
    • Site-wide: 20,501

The impact of reactive mass vaccination campaigns on measles outbreaks in the Katanga region, Democratic Republic of Congo

epidemiology more details view paper
  • Downloaded 955 times
  • Download rankings, all-time:
    • Site-wide: 31,629
    • In epidemiology: 1,748
  • Year to date:
    • Site-wide: 98,157
  • Since beginning of last month:
    • Site-wide: 55,976

CoMix: Changes in social contacts as measured by the contact survey during the 1 COVID-19 pandemic in England between March 2020 and March 2021

infectious diseases more details view paper
  • Downloaded 946 times
  • Download rankings, all-time:
    • Site-wide: 32,144
    • In infectious diseases: 2,753
  • Year to date:
    • Site-wide: 4,876
  • Since beginning of last month:
    • Site-wide: 7,242

Implications of the school-household network structure on SARS-CoV-2 transmission under different school reopening strategies in England

infectious diseases more details view paper
  • Downloaded 866 times
  • Download rankings, all-time:
    • Site-wide: 36,505
    • In infectious diseases: 2,948
  • Year to date:
    • Site-wide: 64,600
  • Since beginning of last month:
    • Site-wide: 65,719

Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh

epidemiology more details view paper
  • Downloaded 859 times
  • Download rankings, all-time:
    • Site-wide: 36,953
    • In epidemiology: 1,969
  • Year to date:
    • Site-wide: 113,509
  • Since beginning of last month:
    • Site-wide: 152,899

Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis

epidemiology more details view paper
  • Downloaded 733 times
  • Download rankings, all-time:
    • Site-wide: 46,433
    • In epidemiology: 2,340
  • Year to date:
    • Site-wide: 79,392
  • Since beginning of last month:
    • Site-wide: 120,191

Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey data

epidemiology more details view paper
  • Downloaded 711 times
  • Download rankings, all-time:
    • Site-wide: 48,410
    • In epidemiology: 2,412
  • Year to date:
    • Site-wide: 15,461
  • Since beginning of last month:
    • Site-wide: 47,726

Evaluating the use of the reproduction number as an epidemiological tool, using spatio-temporal trends of the Covid-19 outbreak in England

epidemiology more details view paper
  • Downloaded 696 times
  • Download rankings, all-time:
    • Site-wide: 49,809
    • In epidemiology: 2,457
  • Year to date:
    • Site-wide: 43,755
  • Since beginning of last month:
    • Site-wide: 38,829

Roles of generation-interval distributions in shaping relative epidemic strength, speed, and control of new SARS-CoV-2 variants

epidemiology more details view paper
  • Downloaded 646 times
  • Download rankings, all-time:
    • Site-wide: 55,207
    • In epidemiology: 2,641
  • Year to date:
    • Site-wide: 8,408
  • Since beginning of last month:
    • Site-wide: 5,865

Probabilistic reconstruction of measles transmission clusters from routinely collected surveillance data

infectious diseases more details view paper
  • Downloaded 614 times
  • Download rankings, all-time:
    • Site-wide: 59,066
    • In infectious diseases: 3,740
  • Year to date:
    • Site-wide: 97,806
  • Since beginning of last month:
    • Site-wide: 86,622

Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji

epidemiology more details view paper
  • Downloaded 533 times
  • Download rankings, all-time:
    • Site-wide: 70,264
    • In epidemiology: 3,180
  • Year to date:
    • Site-wide: 57,058
  • Since beginning of last month:
    • Site-wide: 161,870

The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru

epidemiology more details view paper
  • Downloaded 475 times
  • Download rankings, all-time:
    • Site-wide: 80,179
    • In epidemiology: 3,543
  • Year to date:
    • Site-wide: 113,571
  • Since beginning of last month:
    • Site-wide: 152,692

Estimation of Rift Valley fever virus spillover to humans during the Mayotte 2018-2019 epidemic

epidemiology more details view paper
  • Downloaded 468 times
  • Download rankings, all-time:
    • Site-wide: 81,488
    • In epidemiology: 3,587
  • Year to date:
    • Site-wide: 97,803
  • Since beginning of last month:
    • Site-wide: 85,360

The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya

epidemiology more details view paper
  • Downloaded 414 times
  • Download rankings, all-time:
    • Site-wide: 92,383
    • In epidemiology: 4,015
  • Year to date:
    • Site-wide: 59,802
  • Since beginning of last month:
    • Site-wide: 46,096

Fine-scale family structure shapes influenza transmission risk in households: insights from a study of primary school students in Matsumoto city, 2014/15.

epidemiology more details view paper
  • Downloaded 414 times
  • Download rankings, all-time:
    • Site-wide: 92,428
    • In epidemiology: 4,021
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 160,331

Interventions targeting nonsymptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case-study

epidemiology more details view paper
  • Downloaded 386 times
  • Download rankings, all-time:
    • Site-wide: 98,688
    • In epidemiology: 4,247
  • Year to date:
    • Site-wide: 91,305
  • Since beginning of last month:
    • Site-wide: 78,012

Changes in UK hospital mortality in the first wave of COVID-19: the ISARIC WHO Clinical Characterisation Protocol prospective multicentre observational cohort study

infectious diseases more details view paper
  • Downloaded 382 times
  • Download rankings, all-time:
    • Site-wide: 99,709
    • In infectious diseases: 4,863
  • Year to date:
    • Site-wide: 24,106
  • Since beginning of last month:
    • Site-wide: 78,536

Estimating the increase in reproduction number associated with the Delta variant using local area dynamics in England

epidemiology more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 110,799
    • In epidemiology: 4,745
  • Year to date:
    • Site-wide: 7,893
  • Since beginning of last month:
    • Site-wide: 992

The impact of local vaccine coverage and recent incidence on measles transmission in France between 2009 and 2018

infectious diseases more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 144,160
    • In infectious diseases: 6,144
  • Year to date:
    • Site-wide: 30,989
  • Since beginning of last month:
    • Site-wide: 76,594

Comparing human and model-based forecasts of COVID-19 in Germany and Poland

epidemiology more details view paper
  • Downloaded 209 times
  • Download rankings, all-time:
    • Site-wide: 144,601
    • In epidemiology: 6,071
  • Year to date:
    • Site-wide: 67,994
  • Since beginning of last month:
    • Site-wide: 1,736

Comparative assessment of methods for short-term forecasts of COVID-19 admissions in England at the local level

epidemiology more details view paper
  • Downloaded 203 times
  • Download rankings, all-time:
    • Site-wide: 146,161
    • In epidemiology: 6,120
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

National and subnational short-term forecasting of COVID-19 in Germany and Poland, early 2021

epidemiology more details view paper
  • Downloaded 152 times
  • Download rankings, all-time:
    • Site-wide: 157,427
    • In epidemiology: 6,527
  • Year to date:
    • Site-wide: 48,741
  • Since beginning of last month:
    • Site-wide: 18,129

The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020

infectious diseases more details view paper
  • Downloaded 150 times
  • Download rankings, all-time:
    • Site-wide: 157,832
    • In infectious diseases: 6,539
  • Year to date:
    • Site-wide: 19,837
  • Since beginning of last month:
    • Site-wide: 40,924

Measuring the unknown: an estimator and simulation study for assessing case reporting during epidemics

bioinformatics more details view paper
  • Downloaded 149 times
  • Download rankings, all-time:
    • Site-wide: 157,924
    • In bioinformatics: 11,975
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 113,017

Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan

infectious diseases more details view paper
  • Downloaded 100 times
  • Download rankings, all-time:
    • Site-wide: 165,691
    • In infectious diseases: 6,791
  • Year to date:
    • Site-wide: 67,047
  • Since beginning of last month:
    • Site-wide: 110,942

PanLingua

News