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Author: Rommie E Amaro

Rankings

  • All-time downloads: 36,485 (rank: 3,816 )
  • Categories:
    • biochemistry: 765 (rank: 6,290 (tie) )
    • biophysics: 11,138 (rank: 91 )
    • immunology: 23,474 (rank: 373 (tie) )
    • scientific communication and education: 180 (rank: 3,327 (tie) )
    • systems biology: 928 (rank: 4,452 (tie) )

Downloads per author, site-wide

Preprints

SARS-CoV-2 escape in vitro from a highly neutralizing COVID-19 convalescent plasma

immunology more details view paper
  • Downloaded 23,474 times
  • Download rankings, all-time:
    • Site-wide: 275
    • In immunology: 14
  • Year to date:
    • Site-wide: 21
  • Since beginning of last month:
    • Site-wide: None

Beyond Shielding: The Roles of Glycans in SARS-CoV-2 Spike Protein

biophysics more details view paper
  • Downloaded 5,655 times
  • Download rankings, all-time:
    • Site-wide: 1,594
    • In biophysics: 17
  • Year to date:
    • Site-wide: 3,092
  • Since beginning of last month:
    • Site-wide: 3,047

AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics

biophysics more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 17,142
    • In biophysics: 438
  • Year to date:
    • Site-wide: 3,564
  • Since beginning of last month:
    • Site-wide: None

A Multiscale Coarse-grained Model of the SARS-CoV-2 Virion

biophysics more details view paper
  • Downloaded 935 times
  • Download rankings, all-time:
    • Site-wide: 21,717
    • In biophysics: 605
  • Year to date:
    • Site-wide: 11,435
  • Since beginning of last month:
    • Site-wide: 13,171

3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries

systems biology more details view paper
  • Downloaded 928 times
  • Download rankings, all-time:
    • Site-wide: 21,975
    • In systems biology: 465
  • Year to date:
    • Site-wide: 29,092
  • Since beginning of last month:
    • Site-wide: 27,195

The flexibility of ACE2 in the context of SARS-CoV-2 infection

biophysics more details view paper
  • Downloaded 696 times
  • Download rankings, all-time:
    • Site-wide: 32,888
    • In biophysics: 1,052
  • Year to date:
    • Site-wide: 12,089
  • Since beginning of last month:
    • Site-wide: 5,997

Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking

biophysics more details view paper
  • Downloaded 645 times
  • Download rankings, all-time:
    • Site-wide: 36,424
    • In biophysics: 1,195
  • Year to date:
    • Site-wide: 116,905
  • Since beginning of last month:
    • Site-wide: 105,537

A glycan gate controls opening of the SARS-CoV-2 spike protein

biophysics more details view paper
  • Downloaded 625 times
  • Download rankings, all-time:
    • Site-wide: 37,886
    • In biophysics: 1,246
  • Year to date:
    • Site-wide: 968
  • Since beginning of last month:
    • Site-wide: 328

Structural basis for ligand modulation of the CCR2 conformational landscape

biophysics more details view paper
  • Downloaded 591 times
  • Download rankings, all-time:
    • Site-wide: 40,702
    • In biophysics: 1,340
  • Year to date:
    • Site-wide: 109,516
  • Since beginning of last month:
    • Site-wide: None

Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B

biochemistry more details view paper
  • Downloaded 520 times
  • Download rankings, all-time:
    • Site-wide: 47,564
    • In biochemistry: 1,218
  • Year to date:
    • Site-wide: 118,686
  • Since beginning of last month:
    • Site-wide: None

An Open Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries

biophysics more details view paper
  • Downloaded 413 times
  • Download rankings, all-time:
    • Site-wide: 61,235
    • In biophysics: 2,196
  • Year to date:
    • Site-wide: 73,345
  • Since beginning of last month:
    • Site-wide: 52,471

Multiscale simulations examining glycan shield effects on drug binding to influenza neuraminidase

biophysics more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 68,103
    • In biophysics: 2,513
  • Year to date:
    • Site-wide: 23,206
  • Since beginning of last month:
    • Site-wide: 42,242

Benchmarking ensemble docking methods as a scientific outreach project

scientific communication and education more details view paper
  • Downloaded 180 times
  • Download rankings, all-time:
    • Site-wide: 106,347
    • In scientific communication and education: 632
  • Year to date:
    • Site-wide: 36,692
  • Since beginning of last month:
    • Site-wide: None

Disease related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveals a path to selective inhibitors

biochemistry more details view paper
  • Downloaded 151 times
  • Download rankings, all-time:
    • Site-wide: 112,163
    • In biochemistry: 3,351
  • Year to date:
    • Site-wide: 67,553
  • Since beginning of last month:
    • Site-wide: None

Markov State Models and NMR Uncover an Overlooked Allosteric Loop in p53

biophysics more details view paper
  • Downloaded 109 times
  • Download rankings, all-time:
    • Site-wide: 119,893
    • In biophysics: 4,631
  • Year to date:
    • Site-wide: 108,636
  • Since beginning of last month:
    • Site-wide: None

Discovery of an IKK2 Site that Allosterically Controls Its Activation

biochemistry more details view paper
  • Downloaded 94 times
  • Download rankings, all-time:
    • Site-wide: 122,457
    • In biochemistry: 3,688
  • Year to date:
    • Site-wide: 13,129
  • Since beginning of last month:
    • Site-wide: 9,853

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