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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,118 bioRxiv papers from 295,271 authors.

Author: D. Thirumalai

  • Most recently observed institution: Department of Chemistry, The University of Texas

Rankings

  • All-time downloads: 10,475 (rank: 4,012 out of 295,293)
  • Categories:
    • biophysics: 8,927 (rank: 48 out of 11,668)
    • cancer biology: 1,346 (rank: 1,947 (tie) out of 18,701)
    • cell biology: 202 (rank: 15,348 (tie) out of 19,948)

Downloads per author, site-wide

Preprints

Cell growth rate dictates the onset of glass to fluid-like transition and long time super-diffusion in an evolving cell colony

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Interphase Human Chromosome Exhibits Out of Equilibrium Glassy Dynamics

biophysics more details view paper
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Architecture of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci

biophysics more details view paper
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Interplay of Driver, Mini-Driver, and Deleterious Passenger Mutations on Cancer Progression

cancer biology more details view paper
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Share, but unequally: A plausible mechanism for emergence and maintenance of intratumor heterogeneity

cancer biology more details view paper
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Kinematics of the Lever Arm Swing in Myosin VI

biophysics more details view paper
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Dynamics of Allosteric Transitions in Dynein

biophysics more details view paper
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Universal nature of collapsibility in the context of protein folding and evolution

biophysics more details view paper
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How do metal ions direct ribozyme folding?

biophysics more details view paper
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Conformational Heterogeneity in Human Interphase Chromosome Organization Reconciles the FISH and Hi-C Paradox

biophysics more details view paper
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Salt Effects on the Thermodynamics of a Frameshifting RNA Pseudoknot under Tension

biophysics more details view paper
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Protein Collapse is Encoded in the Folded State Architecture

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Discrete step sizes of molecular motors lead to bimodal non-Gaussian velocity distributions under force

biophysics more details view paper
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Molecular Simulations of ion effects on the Thermodynamics of RNA Folding

biophysics more details view paper
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Collapse Precedes Folding in Denaturant-Dependent Assembly of Ubiquitin

biophysics more details view paper
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Processivity, velocity and universal characteristics of nucleic acid unwinding by helicases

biophysics more details view paper
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On the Importance of Hydrodynamic Interactions in the Stepping Kinetics of Kinesin

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Optimal Information Transfer In Enzymatic Networks: A Field Theoretic Formulation

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Dual Role of Cell-Cell Adhesion In Tumor Suppression and Proliferation

cancer biology more details view paper
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Charge fluctuation effects on the shape of flexible polyampholytes with applications to Intrinsically disordered proteins

biophysics more details view paper
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Folding PDZ2 domain using the Molecular Transfer Model

biophysics more details view paper
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Noise Control In Gene Regulatory Networks With Negative Feedback

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Ripping RNA by Force using Gaussian Network Models

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Denaturants alter the flux through multiple pathways in the folding of PDZ domain

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Generalized Rayleigh-Plesset Theory for Cell Size Maintenance in Viruses and Bacteria

cell biology more details view paper
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Frictional effects on RNA folding: Speed limit and Kramers turnover

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Molecular chaperones maximize the native state yield per unit time by driving substrates out of equilibrium

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Ion Condensation onto Ribozyme is Site-Specific and Fold-Dependent

biophysics more details view paper
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Processivity and Velocity for Motors Stepping on Periodic Tracks

biophysics more details view paper
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Signaling Networks and Dynamics of Allosteric Transitions in Bacterial Chaperonin GroEL: Implications for Iterative Annealing of Misfolded Proteins

biophysics more details view paper
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Parsing the roles of neck-linker docking and tethered head diffusion in the stepping dynamics of kinesin

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Interface residues that drive allosteric transitions also control the assembly of L-lactate dehydrogenase

biophysics more details view paper
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Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknot

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Forced-rupture of Cell-Adhesion Complexes Reveals abrupt switch between two Brittle States

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Spatially heterogeneous dynamics of cells in a growing tumor spheroid: Comparison between Theory and Experiments

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