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Author: Arvind Ramanathan

Rankings

  • All-time downloads: 18,501 (rank: 17,006 )
  • Categories:
    • biochemistry: 472 (rank: 20,023 (tie) )
    • bioinformatics: 656 (rank: 29,745 (tie) )
    • biophysics: 13,637 (rank: 139 )
    • cancer biology: 408 (rank: 34,632 (tie) )
    • molecular biology: 617 (rank: 16,918 (tie) )
    • neuroscience: 239 (rank: 96,401 (tie) )
    • systems biology: 517 (rank: 11,685 (tie) )

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Preprints

#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol

biophysics more details view paper
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    • Site-wide: 4,761
    • In biophysics: 70
  • Year to date:
    • Site-wide: 1,703
  • Since beginning of last month:
    • Site-wide: 8,864

Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action

biophysics more details view paper
  • Downloaded 2,889 times
  • Download rankings, all-time:
    • Site-wide: 7,482
    • In biophysics: 156
  • Year to date:
    • Site-wide: 1,765
  • Since beginning of last month:
    • Site-wide: 2,891

AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics

biophysics more details view paper
  • Downloaded 2,702 times
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    • Site-wide: 8,258
    • In biophysics: 148
  • Year to date:
    • Site-wide: 32,066
  • Since beginning of last month:
    • Site-wide: 29,493

High Throughput Virtual Screening and Validation of a SARS-CoV-2 Main Protease Non-Covalent Inhibitor

biophysics more details view paper
  • Downloaded 1,510 times
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    • Site-wide: 20,063
    • In biophysics: 474
  • Year to date:
    • Site-wide: 29,995
  • Since beginning of last month:
    • Site-wide: 46,633

Cardiolipin-dependent Properties of Model Mitochondrial Membranes from Molecular Dynamics Simulations

biophysics more details view paper
  • Downloaded 1,249 times
  • Download rankings, all-time:
    • Site-wide: 27,179
    • In biophysics: 987
  • Year to date:
    • Site-wide: 22,562
  • Since beginning of last month:
    • Site-wide: 79,054

Deep clustering of protein folding simulations

biophysics more details view paper
  • Downloaded 1,128 times
  • Download rankings, all-time:
    • Site-wide: 31,881
    • In biophysics: 881
  • Year to date:
    • Site-wide: 193,338
  • Since beginning of last month:
    • Site-wide: 148,890

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics.

bioinformatics more details view paper
  • Downloaded 787 times
  • Download rankings, all-time:
    • Site-wide: 55,047
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 5,004
  • Since beginning of last month:
    • Site-wide: 204

Structural dynamics of the β-coronavirus Mpro protease ligand binding sites

biophysics more details view paper
  • Downloaded 680 times
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    • Site-wide: 68,094
    • In biophysics: 2,217
  • Year to date:
    • Site-wide: 116,173
  • Since beginning of last month:
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Proteome plasticity in response to persistent environmental change

molecular biology more details view paper
  • Downloaded 635 times
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    • Site-wide: 74,725
    • In molecular biology: 2,038
  • Year to date:
    • Site-wide: 49,585
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    • Site-wide: 155,397

Predictive uncertainty in mechanistic models of cellular processes calibrated to experimental data

systems biology more details view paper
  • Downloaded 549 times
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    • Site-wide: 89,626
    • In systems biology: 1,878
  • Year to date:
    • Site-wide: 35,418
  • Since beginning of last month:
    • Site-wide: 160,539

Biochemical and structural analysis reveals the Neurofibromin (NF1) protein forms a high-affinity dimer

biochemistry more details view paper
  • Downloaded 493 times
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    • Site-wide: 101,686
    • In biochemistry: 2,821
  • Year to date:
    • Site-wide: 191,835
  • Since beginning of last month:
    • Site-wide: 94,405

Steering Molecular Dynamics Simulations of Membrane-Associated Proteins with Neutron Reflection Results

biophysics more details view paper
  • Downloaded 427 times
  • Download rankings, all-time:
    • Site-wide: 117,624
    • In biophysics: 4,395
  • Year to date:
    • Site-wide: 121,310
  • Since beginning of last month:
    • Site-wide: 88,043

ARYL HYDROCARBON RECEPTOR BLOCKS AGING-INDUCED SENESCENCE IN THE LIVER AND FIBROBLAST CELLS

cancer biology more details view paper
  • Downloaded 420 times
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    • Site-wide: 119,423
    • In cancer biology: 3,454
  • Year to date:
    • Site-wide: 99,703
  • Since beginning of last month:
    • Site-wide: 205,027

BigNeuron: A resource to benchmark and predict best-performing algorithms for automated reconstruction of neuronal morphology

bioinformatics more details view paper
  • Downloaded 418 times
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    • Site-wide: 119,900
    • In bioinformatics: 11,687
  • Year to date:
    • Site-wide: 14,409
  • Since beginning of last month:
    • Site-wide: 14,507

Visual Analytics for Deep Embeddings of Large Scale Molecular Dynamics Simulations

bioinformatics more details view paper
  • Downloaded 400 times
  • Download rankings, all-time:
    • Site-wide: 124,847
    • In bioinformatics: 10,127
  • Year to date:
    • Site-wide: 164,712
  • Since beginning of last month:
    • Site-wide: 87,555

Mechanisms of Coupling between Angiotensin Converting Enzyme 2 and Nicotinic Acetylcholine Receptors

neuroscience more details view paper
  • Downloaded 273 times
  • Download rankings, all-time:
    • Site-wide: 162,236
    • In neuroscience: 23,964
  • Year to date:
    • Site-wide: 94,351
  • Since beginning of last month:
    • Site-wide: 38,679

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