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Author: Joshua D. Campbell

Rankings

  • All-time downloads: 12,144 (rank: 22,233 )
  • Categories:
    • bioinformatics: 6,960 (rank: 1,864 )
    • cancer biology: 2,535 (rank: 3,017 (tie) )
    • cell biology: 525 (rank: 24,793 (tie) )
    • epidemiology: 527 (rank: 20,698 (tie) )
    • genomics: 646 (rank: 35,975 (tie) )
    • microbiology: 355 (rank: 48,334 (tie) )
    • respiratory medicine: 596 (rank: 1,698 (tie) )

Downloads per author, site-wide

Preprints

Interactive single cell RNA-Seq analysis with the Single Cell Toolkit (SCTK)

bioinformatics more details view paper
  • Downloaded 1,596 times
  • Download rankings, all-time:
    • Site-wide: 14,561
    • In bioinformatics: 1,599
  • Year to date:
    • Site-wide: 44,898
  • Since beginning of last month:
    • Site-wide: 96,526

Pipeliner: A Nextflow-based framework for the definition of sequencing data processing pipelines

bioinformatics more details view paper
  • Downloaded 1,318 times
  • Download rankings, all-time:
    • Site-wide: 19,574
    • In bioinformatics: 2,186
  • Year to date:
    • Site-wide: 59,269
  • Since beginning of last month:
    • Site-wide: 94,551

Decontamination of ambient RNA in single-cell RNA-seq with DecontX

bioinformatics more details view paper
  • Downloaded 1,242 times
  • Download rankings, all-time:
    • Site-wide: 21,380
    • In bioinformatics: 2,377
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 61,388

Whole genome doubling confers unique genetic vulnerabilities on tumor cells

cancer biology more details view paper
  • Downloaded 1,117 times
  • Download rankings, all-time:
    • Site-wide: 25,167
    • In cancer biology: 626
  • Year to date:
    • Site-wide: 66,172
  • Since beginning of last month:
    • Site-wide: 55,569

Expanding discovery from cancer genomes by integrating protein network analyses with in vivo tumorigenesis assays

cancer biology more details view paper
  • Downloaded 988 times
  • Download rankings, all-time:
    • Site-wide: 30,219
    • In cancer biology: 764
  • Year to date:
    • Site-wide: 121,810
  • Since beginning of last month:
    • Site-wide: 120,331

Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data

bioinformatics more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 37,281
    • In bioinformatics: 3,959
  • Year to date:
    • Site-wide: 53,943
  • Since beginning of last month:
    • Site-wide: 56,042

scruff: An R/Bioconductor package for preprocessing single-cell RNA-sequencing data

bioinformatics more details view paper
  • Downloaded 702 times
  • Download rankings, all-time:
    • Site-wide: 49,452
    • In bioinformatics: 5,014
  • Year to date:
    • Site-wide: 128,303
  • Since beginning of last month:
    • Site-wide: 103,081

Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution

genomics more details view paper
  • Downloaded 646 times
  • Download rankings, all-time:
    • Site-wide: 55,353
    • In genomics: 4,080
  • Year to date:
    • Site-wide: 127,383
  • Since beginning of last month:
    • Site-wide: 103,345

The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the discovery, prediction, and exploration of mutational signatures

bioinformatics more details view paper
  • Downloaded 637 times
  • Download rankings, all-time:
    • Site-wide: 56,400
    • In bioinformatics: 5,568
  • Year to date:
    • Site-wide: 101,414
  • Since beginning of last month:
    • Site-wide: 56,050

Celda: A Bayesian model to perform co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 609 times
  • Download rankings, all-time:
    • Site-wide: 59,857
    • In bioinformatics: 5,851
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 30,111

Genetic ancestry contributes to somatic mutations in lung cancers from admixed Latin American populations

epidemiology more details view paper
  • Downloaded 527 times
  • Download rankings, all-time:
    • Site-wide: 71,381
    • In epidemiology: 3,238
  • Year to date:
    • Site-wide: 51,068
  • Since beginning of last month:
    • Site-wide: 41,837

Multi-Modal Profiling of Human Fetal Liver-Derived Hematopoietic Stem Cells Reveals the Molecular Signature of Engraftment Potential

cell biology more details view paper
  • Downloaded 525 times
  • Download rankings, all-time:
    • Site-wide: 71,804
    • In cell biology: 3,180
  • Year to date:
    • Site-wide: 19,026
  • Since beginning of last month:
    • Site-wide: 64,506

Molecular Subtyping reveals Immune Alterations associated with Progression of Bronchial Premalignant Lesions

cancer biology more details view paper
  • Downloaded 430 times
  • Download rankings, all-time:
    • Site-wide: 89,282
    • In cancer biology: 2,652
  • Year to date:
    • Site-wide: 125,712
  • Since beginning of last month:
    • Site-wide: 148,423

Macrophages govern antiviral responses in human lung tissues protected from SARS-CoV-2 infection

microbiology more details view paper
  • Downloaded 355 times
  • Download rankings, all-time:
    • Site-wide: 106,458
    • In microbiology: 7,363
  • Year to date:
    • Site-wide: 16,089
  • Since beginning of last month:
    • Site-wide: 38,104

Smoking modulates different secretory subpopulations expressing SARS-CoV-2 entry genes in the nasal and bronchial airways

respiratory medicine more details view paper
  • Downloaded 330 times
  • Download rankings, all-time:
    • Site-wide: 112,831
    • In respiratory medicine: 237
  • Year to date:
    • Site-wide: 47,756
  • Since beginning of last month:
    • Site-wide: 39,139

Elevated T cell repertoire diversity is associated with progression of lung squamous cell premalignant lesions

respiratory medicine more details view paper
  • Downloaded 266 times
  • Download rankings, all-time:
    • Site-wide: 129,957
    • In respiratory medicine: 286
  • Year to date:
    • Site-wide: 48,814
  • Since beginning of last month:
    • Site-wide: 66,058

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