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Author: Francesco Beghini

Rankings

  • All-time downloads: 10,237 (rank: 24,134 (tie) )
  • Categories:
    • bioinformatics: 3,914 (rank: 3,839 (tie) )
    • epidemiology: 1,394 (rank: 9,210 (tie) )
    • genomics: 487 (rank: 39,544 (tie) )
    • microbiology: 4,442 (rank: 3,790 )

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Preprints

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

microbiology more details view paper
  • Downloaded 4,092 times
  • Download rankings, all-time:
    • Site-wide: 3,393
    • In microbiology: 243
  • Year to date:
    • Site-wide: 942
  • Since beginning of last month:
    • Site-wide: 6,767

Accessible, curated metagenomic data through ExperimentHub

bioinformatics more details view paper
  • Downloaded 2,519 times
  • Download rankings, all-time:
    • Site-wide: 6,792
    • In bioinformatics: 715
  • Year to date:
    • Site-wide: 57,794
  • Since beginning of last month:
    • Site-wide: 76,102

Critical Assessment of Metagenome Interpretation - the second round of challenges

bioinformatics more details view paper
  • Downloaded 1,395 times
  • Download rankings, all-time:
    • Site-wide: 16,286
    • In bioinformatics: 1,854
  • Year to date:
    • Site-wide: 2,795
  • Since beginning of last month:
    • Site-wide: 1,146

Sociodemographic patterning in the oral microbiome of a diverse sample of New Yorkers

epidemiology more details view paper
  • Downloaded 857 times
  • Download rankings, all-time:
    • Site-wide: 33,361
    • In epidemiology: 1,770
  • Year to date:
    • Site-wide: 99,029
  • Since beginning of last month:
    • Site-wide: 81,358

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

epidemiology more details view paper
  • Downloaded 537 times
  • Download rankings, all-time:
    • Site-wide: 61,925
    • In epidemiology: 2,800
  • Year to date:
    • Site-wide: 99,453
  • Since beginning of last month:
    • Site-wide: 65,991

Strengthening The Organizing and Reporting of Microbiome Studies (STORMS)

genomics more details view paper
  • Downloaded 487 times
  • Download rankings, all-time:
    • Site-wide: 69,280
    • In genomics: 4,818
  • Year to date:
    • Site-wide: 30,084
  • Since beginning of last month:
    • Site-wide: 42,347

A step-by-step sequence-based analysis of virome enrichment protocol for freshwater and sediment samples

microbiology more details view paper
  • Downloaded 350 times
  • Download rankings, all-time:
    • Site-wide: 95,601
    • In microbiology: 6,657
  • Year to date:
    • Site-wide: 44,312
  • Since beginning of last month:
    • Site-wide: 51,814

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