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Author: Trey Ideker

Rankings

  • All-time downloads: 220,217 (rank: 436 )
  • Categories:
    • bioinformatics: 2,292 (rank: 8,034 (tie) )
    • cancer biology: 1,970 (rank: 4,526 (tie) )
    • developmental biology: 1,053 (rank: 5,435 (tie) )
    • evolutionary biology: 25,889 (rank: 55 )
    • genetics: 2,273 (rank: 9,591 )
    • genomics: 2,005 (rank: 14,185 (tie) )
    • microbiology: 2,382 (rank: 7,982 (tie) )
    • systems biology: 182,353 (rank: 3 )

Downloads per author, site-wide

Preprints

Unexpected growth of a classic yeast auxotroph

molecular biology more details view paper

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A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

systems biology more details view paper
  • Downloaded 178,503 times
  • Download rankings, all-time:
    • Site-wide: 31
    • In systems biology: 1
  • Year to date:
    • Site-wide: 2,127
  • Since beginning of last month:
    • Site-wide: 1,098

Quantitative translation of dog-to-human aging by conserved remodeling of epigenetic networks

evolutionary biology more details view paper
  • Downloaded 25,402 times
  • Download rankings, all-time:
    • Site-wide: 382
    • In evolutionary biology: 6
  • Year to date:
    • Site-wide: 2,089
  • Since beginning of last month:
    • Site-wide: 3,567

Functional Landscape of SARS-CoV-2 Cellular Restriction

microbiology more details view paper
  • Downloaded 2,382 times
  • Download rankings, all-time:
    • Site-wide: 8,108
    • In microbiology: 485
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 13,299

Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Calls

genomics more details view paper
  • Downloaded 2,005 times
  • Download rankings, all-time:
    • Site-wide: 10,444
    • In genomics: 1,009
  • Year to date:
    • Site-wide: 120,205
  • Since beginning of last month:
    • Site-wide: 65,542

Thousands of missing variants in the UK BioBankare recoverable by genome realignment

genetics more details view paper
  • Downloaded 1,944 times
  • Download rankings, all-time:
    • Site-wide: 10,926
    • In genetics: 444
  • Year to date:
    • Site-wide: 117,363
  • Since beginning of last month:
    • Site-wide: 128,998

Mapping cell structure across scales by fusing protein images and interactions

systems biology more details view paper
  • Downloaded 1,813 times
  • Download rankings, all-time:
    • Site-wide: 12,120
    • In systems biology: 204
  • Year to date:
    • Site-wide: 14,561
  • Since beginning of last month:
    • Site-wide: 6,806

Deep functional synthesis: a machine learning approach to gene functional enrichment

systems biology more details view paper
  • Downloaded 1,166 times
  • Download rankings, all-time:
    • Site-wide: 23,650
    • In systems biology: 441
  • Year to date:
    • Site-wide: 84,499
  • Since beginning of last month:
    • Site-wide: 34,511

Deciphering signaling specificity with interpretable deep neural networks

bioinformatics more details view paper
  • Downloaded 1,164 times
  • Download rankings, all-time:
    • Site-wide: 23,734
    • In bioinformatics: 2,629
  • Year to date:
    • Site-wide: 98,290
  • Since beginning of last month:
    • Site-wide: 50,066

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

bioinformatics more details view paper
  • Downloaded 1,128 times
  • Download rankings, all-time:
    • Site-wide: 24,908
    • In bioinformatics: 2,762
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 52,179

Unveiling unexpected complexity and multipotentiality of early heart fields

developmental biology more details view paper
  • Downloaded 1,053 times
  • Download rankings, all-time:
    • Site-wide: 27,614
    • In developmental biology: 506
  • Year to date:
    • Site-wide: 65,132
  • Since beginning of last month:
    • Site-wide: 70,550

Identifying persistent structures in multiscale ‘omics data

systems biology more details view paper
  • Downloaded 871 times
  • Download rankings, all-time:
    • Site-wide: 36,455
    • In systems biology: 736
  • Year to date:
    • Site-wide: 89,207
  • Since beginning of last month:
    • Site-wide: 74,886

Target deconvolution using in vitro evolution in haploid human cells

cancer biology more details view paper
  • Downloaded 697 times
  • Download rankings, all-time:
    • Site-wide: 50,212
    • In cancer biology: 1,394
  • Year to date:
    • Site-wide: 89,481
  • Since beginning of last month:
    • Site-wide: 106,994

Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers

cancer biology more details view paper
  • Downloaded 687 times
  • Download rankings, all-time:
    • Site-wide: 51,157
    • In cancer biology: 1,437
  • Year to date:
    • Site-wide: 96,406
  • Since beginning of last month:
    • Site-wide: 159,930

Electrical activity between skin cells regulates melanoma initiation

cancer biology more details view paper
  • Downloaded 586 times
  • Download rankings, all-time:
    • Site-wide: 63,094
    • In cancer biology: 1,818
  • Year to date:
    • Site-wide: 1,979
  • Since beginning of last month:
    • Site-wide: 654

De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences

evolutionary biology more details view paper
  • Downloaded 487 times
  • Download rankings, all-time:
    • Site-wide: 78,485
    • In evolutionary biology: 3,884
  • Year to date:
    • Site-wide: 101,294
  • Since beginning of last month:
    • Site-wide: 113,741

Defining the Yeast Resistome through in vitro Evolution and Whole Genome Sequencing

genetics more details view paper
  • Downloaded 329 times
  • Download rankings, all-time:
    • Site-wide: 113,633
    • In genetics: 4,570
  • Year to date:
    • Site-wide: 29,839
  • Since beginning of last month:
    • Site-wide: 45,109

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