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Author: Trey Ideker

Rankings

  • All-time downloads: 200,579 (rank: 88 out of 425,297)
  • Categories:
    • bioinformatics: 1,798 (rank: 6,864 (tie) out of 36,113)
    • cancer biology: 990 (rank: 5,961 (tie) out of 30,390)
    • evolutionary biology: 23,431 (rank: 46 out of 21,692)
    • genetics: 1,522 (rank: 10,235 (tie) out of 37,851)
    • genomics: 1,893 (rank: 10,556 (tie) out of 44,357)
    • microbiology: 31 (rank: 49,421 (tie) out of 50,216)
    • systems biology: 170,914 (rank: 3 out of 12,416)

Downloads per author, site-wide

Preprints

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

systems biology more details view paper
  • Downloaded 168,470 times
  • Download rankings, all-time:
    • Site-wide: 6 out of 100,701
    • In systems biology: 1 out of 2,557
  • Year to date:
    • Site-wide: 4 out of 100,701
  • Since beginning of last month:
    • Site-wide: 21 out of 100,701

Quantitative translation of dog-to-human aging by conserved remodeling of epigenetic networks

evolutionary biology more details view paper
  • Downloaded 23,015 times
  • Download rankings, all-time:
    • Site-wide: 72 out of 100,701
    • In evolutionary biology: 5 out of 6,007
  • Year to date:
    • Site-wide: 224 out of 100,701
  • Since beginning of last month:
    • Site-wide: 497 out of 100,701

Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Calls

genomics more details view paper
  • Downloaded 1,893 times
  • Download rankings, all-time:
    • Site-wide: 4,515 out of 100,701
    • In genomics: 740 out of 6,238
  • Year to date:
    • Site-wide: 86,112 out of 100,701
  • Since beginning of last month:
    • Site-wide: None out of 100,701

Thousands of missing variants in the UK BioBankare recoverable by genome realignment

genetics more details view paper
  • Downloaded 1,522 times
  • Download rankings, all-time:
    • Site-wide: 6,502 out of 100,701
    • In genetics: 463 out of 5,013
  • Year to date:
    • Site-wide: 5,753 out of 100,701
  • Since beginning of last month:
    • Site-wide: 9,359 out of 100,701

Deciphering signaling specificity with interpretable deep neural networks

bioinformatics more details view paper
  • Downloaded 1,012 times
  • Download rankings, all-time:
    • Site-wide: 12,826 out of 100,701
    • In bioinformatics: 2,011 out of 9,246
  • Year to date:
    • Site-wide: 56,324 out of 100,701
  • Since beginning of last month:
    • Site-wide: None out of 100,701

Mapping cell structure across scales by fusing protein images and interactions

systems biology more details view paper
  • Downloaded 1,003 times
  • Download rankings, all-time:
    • Site-wide: 13,019 out of 100,701
    • In systems biology: 347 out of 2,557
  • Year to date:
    • Site-wide: 2,418 out of 100,701
  • Since beginning of last month:
    • Site-wide: 3,525 out of 100,701

Deep functional synthesis: a machine learning approach to gene functional enrichment

systems biology more details view paper
  • Downloaded 865 times
  • Download rankings, all-time:
    • Site-wide: 16,488 out of 100,701
    • In systems biology: 442 out of 2,557
  • Year to date:
    • Site-wide: 8,444 out of 100,701
  • Since beginning of last month:
    • Site-wide: 15,657 out of 100,701

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

bioinformatics more details view paper
  • Downloaded 786 times
  • Download rankings, all-time:
    • Site-wide: 19,140 out of 100,701
    • In bioinformatics: 2,839 out of 9,246
  • Year to date:
    • Site-wide: 36,574 out of 100,701
  • Since beginning of last month:
    • Site-wide: None out of 100,701

Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers

cancer biology more details view paper
  • Downloaded 603 times
  • Download rankings, all-time:
    • Site-wide: 28,054 out of 100,701
    • In cancer biology: 908 out of 3,602
  • Year to date:
    • Site-wide: 46,462 out of 100,701
  • Since beginning of last month:
    • Site-wide: 44,417 out of 100,701

Identifying persistent structures in multiscale ‘omics data

systems biology more details view paper
  • Downloaded 576 times
  • Download rankings, all-time:
    • Site-wide: 29,781 out of 100,701
    • In systems biology: 833 out of 2,557
  • Year to date:
    • Site-wide: 5,629 out of 100,701
  • Since beginning of last month:
    • Site-wide: 2,650 out of 100,701

De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences

evolutionary biology more details view paper
  • Downloaded 416 times
  • Download rankings, all-time:
    • Site-wide: 44,160 out of 100,701
    • In evolutionary biology: 2,946 out of 6,007
  • Year to date:
    • Site-wide: 59,678 out of 100,701
  • Since beginning of last month:
    • Site-wide: 47,987 out of 100,701

Target deconvolution using in vitro evolution in haploid human cells

cancer biology more details view paper
  • Downloaded 387 times
  • Download rankings, all-time:
    • Site-wide: 47,554 out of 100,701
    • In cancer biology: 1,534 out of 3,602
  • Year to date:
    • Site-wide: 10,434 out of 100,701
  • Since beginning of last month:
    • Site-wide: 13,466 out of 100,701

Functional Landscape of SARS-CoV-2 Cellular Restriction

microbiology more details view paper
  • Downloaded 31 times
  • Download rankings, all-time:
    • Site-wide: 97,965 out of 100,701
    • In microbiology: 8,556 out of 8,912
  • Year to date:
    • Site-wide: 97,861 out of 100,701
  • Since beginning of last month:
    • Site-wide: 21,141 out of 100,701

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News

  • 20 Oct 2020: Support for sorting preprints using Twitter activity has been removed, at least temporarily, until a new source of social media activity data becomes available.
  • 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
  • 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
  • 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
  • 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
  • 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
  • 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
  • 22 Jan 2019: Nature just published an article about Rxivist and our data.
  • 13 Jan 2019: The Rxivist preprint is live!