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Author: Trey Ideker

Rankings

  • All-time downloads: 173,822 (rank: 87 out of 361,196)
  • Categories:
    • bioinformatics: 1,707 (rank: 6,158 (tie) out of 31,218)
    • cancer biology: 757 (rank: 6,355 (tie) out of 24,514)
    • evolutionary biology: 20,150 (rank: 43 out of 18,720)
    • genetics: 1,329 (rank: 10,287 (tie) out of 33,901)
    • genomics: 1,882 (rank: 9,557 (tie) out of 39,074)
    • systems biology: 147,997 (rank: 10 out of 10,783)

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Preprints

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

systems biology more details view paper
  • Downloaded 147,284 times
  • Download rankings, all-time:
    • Site-wide: 5 out of 83,873
    • In systems biology: 1 out of 2,222
  • Year to date:
    • Site-wide: 4 out of 83,873
  • Since beginning of last month:
    • Site-wide: 6 out of 83,873

Quantitative translation of dog-to-human aging by conserved remodeling of epigenetic networks

evolutionary biology more details view paper
  • Downloaded 19,768 times
  • Download rankings, all-time:
    • Site-wide: 67 out of 83,873
    • In evolutionary biology: 4 out of 5,214
  • Year to date:
    • Site-wide: 323 out of 83,873
  • Since beginning of last month:
    • Site-wide: 1,207 out of 83,873

Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Calls

genomics more details view paper
  • Downloaded 1,882 times
  • Download rankings, all-time:
    • Site-wide: 3,732 out of 83,873
    • In genomics: 674 out of 5,415
  • Year to date:
    • Site-wide: 59,032 out of 83,873
  • Since beginning of last month:
    • Site-wide: 55,079 out of 83,873

Thousands of missing variants in the UK BioBankare recoverable by genome realignment

genetics more details view paper
  • Downloaded 1,329 times
  • Download rankings, all-time:
    • Site-wide: 6,663 out of 83,873
    • In genetics: 487 out of 4,407
  • Year to date:
    • Site-wide: 4,091 out of 83,873
  • Since beginning of last month:
    • Site-wide: 6,194 out of 83,873

Deciphering signaling specificity with interpretable deep neural networks

bioinformatics more details view paper
  • Downloaded 977 times
  • Download rankings, all-time:
    • Site-wide: 11,056 out of 83,873
    • In bioinformatics: 1,815 out of 8,043
  • Year to date:
    • Site-wide: 41,848 out of 83,873
  • Since beginning of last month:
    • Site-wide: 24,774 out of 83,873

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

bioinformatics more details view paper
  • Downloaded 730 times
  • Download rankings, all-time:
    • Site-wide: 17,290 out of 83,873
    • In bioinformatics: 2,622 out of 8,043
  • Year to date:
    • Site-wide: 27,588 out of 83,873
  • Since beginning of last month:
    • Site-wide: 28,880 out of 83,873

Deep functional synthesis: a machine learning approach to gene functional enrichment

systems biology more details view paper
  • Downloaded 713 times
  • Download rankings, all-time:
    • Site-wide: 17,893 out of 83,873
    • In systems biology: 499 out of 2,222
  • Year to date:
    • Site-wide: 6,113 out of 83,873
  • Since beginning of last month:
    • Site-wide: 3,343 out of 83,873

Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers

cancer biology more details view paper
  • Downloaded 573 times
  • Download rankings, all-time:
    • Site-wide: 24,522 out of 83,873
    • In cancer biology: 762 out of 2,926
  • Year to date:
    • Site-wide: 28,960 out of 83,873
  • Since beginning of last month:
    • Site-wide: 37,699 out of 83,873

De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences

evolutionary biology more details view paper
  • Downloaded 382 times
  • Download rankings, all-time:
    • Site-wide: 39,557 out of 83,873
    • In evolutionary biology: 2,772 out of 5,214
  • Year to date:
    • Site-wide: 44,982 out of 83,873
  • Since beginning of last month:
    • Site-wide: 70,664 out of 83,873

Discovering biomarkers of chemotherapy resistance using in vitro evolution in haploid human cells

cancer biology more details view paper
  • Downloaded 184 times
  • Download rankings, all-time:
    • Site-wide: 67,775 out of 83,873
    • In cancer biology: 2,239 out of 2,926
  • Year to date:
    • Site-wide: 12,446 out of 83,873
  • Since beginning of last month:
    • Site-wide: 14,380 out of 83,873

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