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Author: Trey Ideker

Rankings

  • All-time downloads: 226,237 (rank: 498 )
  • Categories:
    • bioinformatics: 2,381 (rank: 8,837 (tie) )
    • cancer biology: 2,584 (rank: 3,828 (tie) )
    • developmental biology: 1,245 (rank: 5,422 (tie) )
    • evolutionary biology: 26,526 (rank: 58 )
    • genetics: 2,534 (rank: 9,638 (tie) )
    • genomics: 2,024 (rank: 15,604 (tie) )
    • microbiology: 2,532 (rank: 8,821 (tie) )
    • molecular biology: 594 (rank: 17,644 (tie) )
    • systems biology: 184,249 (rank: 4 )

Downloads per author, site-wide

Preprints

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

systems biology more details view paper
  • Downloaded 180,705 times
  • Download rankings, all-time:
    • Site-wide: 31
    • In systems biology: 1
  • Year to date:
    • Site-wide: 944
  • Since beginning of last month:
    • Site-wide: 588

Quantitative translation of dog-to-human aging by conserved remodeling of epigenetic networks

evolutionary biology more details view paper
  • Downloaded 26,239 times
  • Download rankings, all-time:
    • Site-wide: 412
    • In evolutionary biology: 6
  • Year to date:
    • Site-wide: 3,781
  • Since beginning of last month:
    • Site-wide: 10,180

Functional Landscape of SARS-CoV-2 Cellular Restriction

microbiology more details view paper
  • Downloaded 2,586 times
  • Download rankings, all-time:
    • Site-wide: 8,821
    • In microbiology: 522
  • Year to date:
    • Site-wide: 44,055
  • Since beginning of last month:
    • Site-wide: None

Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Calls

genomics more details view paper
  • Downloaded 2,039 times
  • Download rankings, all-time:
    • Site-wide: 12,633
    • In genomics: 1,114
  • Year to date:
    • Site-wide: 200,292
  • Since beginning of last month:
    • Site-wide: None

Thousands of missing variants in the UK BioBankare recoverable by genome realignment

genetics more details view paper
  • Downloaded 2,016 times
  • Download rankings, all-time:
    • Site-wide: 12,862
    • In genetics: 476
  • Year to date:
    • Site-wide: 124,698
  • Since beginning of last month:
    • Site-wide: None

Mapping cell structure across scales by fusing protein images and interactions

systems biology more details view paper
  • Downloaded 2,007 times
  • Download rankings, all-time:
    • Site-wide: 12,946
    • In systems biology: 213
  • Year to date:
    • Site-wide: 41,022
  • Since beginning of last month:
    • Site-wide: 10,319

Unveiling unexpected complexity and multipotentiality of early heart fields

developmental biology more details view paper
  • Downloaded 1,271 times
  • Download rankings, all-time:
    • Site-wide: 26,529
    • In developmental biology: 449
  • Year to date:
    • Site-wide: 38,938
  • Since beginning of last month:
    • Site-wide: None

Deep functional synthesis: a machine learning approach to gene functional enrichment

systems biology more details view paper
  • Downloaded 1,270 times
  • Download rankings, all-time:
    • Site-wide: 26,558
    • In systems biology: 476
  • Year to date:
    • Site-wide: 89,164
  • Since beginning of last month:
    • Site-wide: 57,252

Deciphering signaling specificity with interpretable deep neural networks

bioinformatics more details view paper
  • Downloaded 1,223 times
  • Download rankings, all-time:
    • Site-wide: 28,139
    • In bioinformatics: 2,926
  • Year to date:
    • Site-wide: 144,249
  • Since beginning of last month:
    • Site-wide: 148,476

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

bioinformatics more details view paper
  • Downloaded 1,205 times
  • Download rankings, all-time:
    • Site-wide: 28,794
    • In bioinformatics: 3,004
  • Year to date:
    • Site-wide: 119,552
  • Since beginning of last month:
    • Site-wide: 172,522

Electrical activity between skin cells regulates melanoma initiation

cancer biology more details view paper
  • Downloaded 1,066 times
  • Download rankings, all-time:
    • Site-wide: 34,853
    • In cancer biology: 1,026
  • Year to date:
    • Site-wide: 8,227
  • Since beginning of last month:
    • Site-wide: 11,802

Identifying persistent structures in multiscale ‘omics data

systems biology more details view paper
  • Downloaded 969 times
  • Download rankings, all-time:
    • Site-wide: 40,321
    • In systems biology: 746
  • Year to date:
    • Site-wide: 94,801
  • Since beginning of last month:
    • Site-wide: 152,785

Target deconvolution using in vitro evolution in haploid human cells

cancer biology more details view paper
  • Downloaded 959 times
  • Download rankings, all-time:
    • Site-wide: 41,011
    • In cancer biology: 1,151
  • Year to date:
    • Site-wide: 30,319
  • Since beginning of last month:
    • Site-wide: 31,479

On the illusion of auxotrophy: met15Δ yeast cells can grow on inorganic sulfur thanks to the previously uncharacterized homocysteine synthase Yll058w

molecular biology more details view paper
  • Downloaded 764 times
  • Download rankings, all-time:
    • Site-wide: 57,687
    • In molecular biology: 2,159
  • Year to date:
    • Site-wide: 5,323
  • Since beginning of last month:
    • Site-wide: 4,489

Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers

cancer biology more details view paper
  • Downloaded 733 times
  • Download rankings, all-time:
    • Site-wide: 61,342
    • In cancer biology: 1,713
  • Year to date:
    • Site-wide: 172,390
  • Since beginning of last month:
    • Site-wide: 54,577

Defining the Yeast Resistome through in vitro Evolution and Whole Genome Sequencing

genetics more details view paper
  • Downloaded 569 times
  • Download rankings, all-time:
    • Site-wide: 85,933
    • In genetics: 3,329
  • Year to date:
    • Site-wide: 32,880
  • Since beginning of last month:
    • Site-wide: 83,455

De novo emergence of adaptive membrane proteins from thymine-rich intergenic sequences

evolutionary biology more details view paper
  • Downloaded 538 times
  • Download rankings, all-time:
    • Site-wide: 92,134
    • In evolutionary biology: 4,230
  • Year to date:
    • Site-wide: 161,187
  • Since beginning of last month:
    • Site-wide: 123,442

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange

bioinformatics more details view paper
  • Downloaded 78 times
  • Download rankings, all-time:
    • Site-wide: 204,511
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 118,567
  • Since beginning of last month:
    • Site-wide: 11,997

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