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Author: Avi Srivastava

Rankings

  • All-time downloads: 54,435 (rank: 2,638 )
  • Categories:
    • bioinformatics: 35,791 (rank: 78 )
    • genomics: 18,644 (rank: 614 )

Downloads per author, site-wide

Preprints

Integrated analysis of multimodal single-cell data

genomics more details view paper
  • Downloaded 16,598 times
  • Download rankings, all-time:
    • Site-wide: 422
    • In genomics: 20
  • Year to date:
    • Site-wide: 134
  • Since beginning of last month:
    • Site-wide: 130

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

bioinformatics more details view paper
  • Downloaded 14,902 times
  • Download rankings, all-time:
    • Site-wide: 478
    • In bioinformatics: 18
  • Year to date:
    • Site-wide: 26,177
  • Since beginning of last month:
    • Site-wide: 59,441

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 5,917 times
  • Download rankings, all-time:
    • Site-wide: 1,657
    • In bioinformatics: 117
  • Year to date:
    • Site-wide: 10,244
  • Since beginning of last month:
    • Site-wide: 9,420

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 5,310 times
  • Download rankings, all-time:
    • Site-wide: 1,911
    • In bioinformatics: 154
  • Year to date:
    • Site-wide: 5,493
  • Since beginning of last month:
    • Site-wide: 13,794

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

bioinformatics more details view paper
  • Downloaded 3,136 times
  • Download rankings, all-time:
    • Site-wide: 4,052
    • In bioinformatics: 410
  • Year to date:
    • Site-wide: 2,969
  • Since beginning of last month:
    • Site-wide: 5,643

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

bioinformatics more details view paper
  • Downloaded 2,755 times
  • Download rankings, all-time:
    • Site-wide: 4,856
    • In bioinformatics: 516
  • Year to date:
    • Site-wide: 33,574
  • Since beginning of last month:
    • Site-wide: 43,645

Multimodal single-cell chromatin analysis with Signac

genomics more details view paper
  • Downloaded 2,046 times
  • Download rankings, all-time:
    • Site-wide: 7,507
    • In genomics: 812
  • Year to date:
    • Site-wide: 1,179
  • Since beginning of last month:
    • Site-wide: 1,506

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 1,613 times
  • Download rankings, all-time:
    • Site-wide: 10,721
    • In bioinformatics: 1,295
  • Year to date:
    • Site-wide: 62,508
  • Since beginning of last month:
    • Site-wide: 109,916

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

bioinformatics more details view paper
  • Downloaded 696 times
  • Download rankings, all-time:
    • Site-wide: 36,329
    • In bioinformatics: 4,011
  • Year to date:
    • Site-wide: 97,087
  • Since beginning of last month:
    • Site-wide: 99,028

Compression of quantification uncertainty for scRNA-seq counts

bioinformatics more details view paper
  • Downloaded 649 times
  • Download rankings, all-time:
    • Site-wide: 39,834
    • In bioinformatics: 4,322
  • Year to date:
    • Site-wide: 63,036
  • Since beginning of last month:
    • Site-wide: 102,625

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

bioinformatics more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 71,776
    • In bioinformatics: 6,801
  • Year to date:
    • Site-wide: 88,538
  • Since beginning of last month:
    • Site-wide: 126,441

A like-for-like comparison of lightweight-mapping pipelines for single-cell RNA-seq data pre-processing

bioinformatics more details view paper
  • Downloaded 217 times
  • Download rankings, all-time:
    • Site-wide: 106,734
    • In bioinformatics: 9,010
  • Year to date:
    • Site-wide: 13,953
  • Since beginning of last month:
    • Site-wide: 16,634

Accounting for fragments of unexpectedorigin improves transcript quantification inRNA-seq simulations focused on increased realism

bioinformatics more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 108,125
    • In bioinformatics: 9,089
  • Year to date:
    • Site-wide: 14,412
  • Since beginning of last month:
    • Site-wide: 39,551

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