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Author: Avi Srivastava

Rankings

  • All-time downloads: 27,584 (rank: 1,508 out of 365,213)
  • Categories:
    • bioinformatics: 27,584 (rank: 82 out of 31,495)

Downloads per author, site-wide

Preprints

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

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  • Downloaded 12,657 times
  • Download rankings, all-time:
    • Site-wide: 144 out of 84,908
    • In bioinformatics: 19 out of 8,136
  • Year to date:
    • Site-wide: 603 out of 84,908
  • Since beginning of last month:
    • Site-wide: 1,494 out of 84,908

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 5,125 times
  • Download rankings, all-time:
    • Site-wide: 657 out of 84,908
    • In bioinformatics: 113 out of 8,136
  • Year to date:
    • Site-wide: 3,563 out of 84,908
  • Since beginning of last month:
    • Site-wide: 3,173 out of 84,908

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 3,997 times
  • Download rankings, all-time:
    • Site-wide: 1,038 out of 84,908
    • In bioinformatics: 184 out of 8,136
  • Year to date:
    • Site-wide: 716 out of 84,908
  • Since beginning of last month:
    • Site-wide: 1,063 out of 84,908

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

bioinformatics more details view paper
  • Downloaded 2,478 times
  • Download rankings, all-time:
    • Site-wide: 2,403 out of 84,908
    • In bioinformatics: 446 out of 8,136
  • Year to date:
    • Site-wide: 15,168 out of 84,908
  • Since beginning of last month:
    • Site-wide: 14,640 out of 84,908

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 1,420 times
  • Download rankings, all-time:
    • Site-wide: 6,020 out of 84,908
    • In bioinformatics: 1,084 out of 8,136
  • Year to date:
    • Site-wide: 11,165 out of 84,908
  • Since beginning of last month:
    • Site-wide: 9,438 out of 84,908

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

bioinformatics more details view paper
  • Downloaded 1,150 times
  • Download rankings, all-time:
    • Site-wide: 8,619 out of 84,908
    • In bioinformatics: 1,460 out of 8,136
  • Year to date:
    • Site-wide: 859 out of 84,908
  • Since beginning of last month:
    • Site-wide: 1,669 out of 84,908

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

bioinformatics more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 28,643 out of 84,908
    • In bioinformatics: 3,822 out of 8,136
  • Year to date:
    • Site-wide: 2,795 out of 84,908
  • Since beginning of last month:
    • Site-wide: 6,056 out of 84,908

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

bioinformatics more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 58,341 out of 84,908
    • In bioinformatics: 6,273 out of 8,136
  • Year to date:
    • Site-wide: 8,820 out of 84,908
  • Since beginning of last month:
    • Site-wide: 23,455 out of 84,908

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