Rxivist logo

Author: David W Eyre

Rankings

  • All-time downloads: 233,978 (rank: 269 )
  • Categories:
    • bioinformatics: 2,282 (rank: 7,444 (tie) )
    • epidemiology: 23,836 (rank: 774 )
    • genomics: 5,444 (rank: 4,707 )
    • health informatics: 2,536 (rank: 377 (tie) )
    • infectious diseases: 194,276 (rank: 114 )
    • microbiology: 5,526 (rank: 3,024 )
    • molecular biology: 78 (rank: 31,829 (tie) )

Downloads per author, site-wide

Preprints

Combination therapy of infliximab and thiopurines, but not monotherapy with infliximab or vedolizumab, is associated with attenuated IgA and neutralisation responses to SARS-CoV-2 in inflammatory bowel disease.

gastroenterology more details view paper

No download data for this paper yet.

Changes in paediatric respiratory infections at a UK teaching hospital 2016-2021; impact of the SARS-CoV-2 pandemic.

infectious diseases more details view paper

No download data for this paper yet.

The impact of SARS-CoV-2 vaccination on Alpha and Delta variant transmission

infectious diseases more details view paper

No download data for this paper yet.

Evaluation of antibody testing for SARS-Cov-2 using ELISA and lateral flow immunoassays

infectious diseases more details view paper
  • Downloaded 118,412 times
  • Download rankings, all-time:
    • Site-wide: 42
    • In infectious diseases: 17
  • Year to date:
    • Site-wide: 56
  • Since beginning of last month:
    • Site-wide: 150

Impact of Delta on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK

epidemiology more details view paper
  • Downloaded 23,170 times
  • Download rankings, all-time:
    • Site-wide: 378
    • In epidemiology: 69
  • Year to date:
    • Site-wide: 109
  • Since beginning of last month:
    • Site-wide: 15

The impact of SARS-CoV-2 vaccines on antibody responses in the general population in the United Kingdom

infectious diseases more details view paper
  • Downloaded 14,860 times
  • Download rankings, all-time:
    • Site-wide: 618
    • In infectious diseases: 221
  • Year to date:
    • Site-wide: 172
  • Since beginning of last month:
    • Site-wide: 5,090

Antibodies to SARS-CoV-2 are associated with protection against reinfection

infectious diseases more details view paper
  • Downloaded 10,705 times
  • Download rankings, all-time:
    • Site-wide: 959
    • In infectious diseases: 306
  • Year to date:
    • Site-wide: 1,077
  • Since beginning of last month:
    • Site-wide: 4,635

Increased infections, but not viral burden, with a new SARS-CoV-2 variant

infectious diseases more details view paper
  • Downloaded 8,376 times
  • Download rankings, all-time:
    • Site-wide: 1,302
    • In infectious diseases: 387
  • Year to date:
    • Site-wide: 329
  • Since beginning of last month:
    • Site-wide: 6,369

Ct threshold values, a proxy for viral load in community SARS-CoV-2 cases, demonstrate wide variation across populations and over time

infectious diseases more details view paper
  • Downloaded 5,955 times
  • Download rankings, all-time:
    • Site-wide: 2,009
    • In infectious diseases: 532
  • Year to date:
    • Site-wide: 669
  • Since beginning of last month:
    • Site-wide: 1,499

SARS-CoV-2 infectivity by viral load, S gene variants and demographic factors and the utility of lateral flow devices to prevent transmission

infectious diseases more details view paper
  • Downloaded 5,311 times
  • Download rankings, all-time:
    • Site-wide: 2,340
    • In infectious diseases: 593
  • Year to date:
    • Site-wide: 512
  • Since beginning of last month:
    • Site-wide: 3,325

Within-host genomics of SARS-CoV-2

genomics more details view paper
  • Downloaded 5,307 times
  • Download rankings, all-time:
    • Site-wide: 2,341
    • In genomics: 204
  • Year to date:
    • Site-wide: 2,432
  • Since beginning of last month:
    • Site-wide: 11,874

Differential occupational risks to healthcare workers from SARS-CoV-2: A prospective observational study

infectious diseases more details view paper
  • Downloaded 4,650 times
  • Download rankings, all-time:
    • Site-wide: 2,824
    • In infectious diseases: 658
  • Year to date:
    • Site-wide: 9,488
  • Since beginning of last month:
    • Site-wide: 33,372

An observational cohort study on the incidence of SARS-CoV-2 infection and B.1.1.7 variant infection in healthcare workers by antibody and vaccination status

infectious diseases more details view paper
  • Downloaded 3,547 times
  • Download rankings, all-time:
    • Site-wide: 4,097
    • In infectious diseases: 825
  • Year to date:
    • Site-wide: 805
  • Since beginning of last month:
    • Site-wide: 2,364

T cell assays differentiate clinical and subclinical SARS-CoV-2 infections from cross-reactive antiviral responses

infectious diseases more details view paper
  • Downloaded 3,180 times
  • Download rankings, all-time:
    • Site-wide: 4,797
    • In infectious diseases: 922
  • Year to date:
    • Site-wide: 5,245
  • Since beginning of last month:
    • Site-wide: 21,696

Diagnosis of SARS-CoV-2 infection with LamPORE, a high-throughput platform combining loop-mediated isothermal amplification and nanopore sequencing

infectious diseases more details view paper
  • Downloaded 3,143 times
  • Download rankings, all-time:
    • Site-wide: 4,865
    • In infectious diseases: 928
  • Year to date:
    • Site-wide: 5,562
  • Since beginning of last month:
    • Site-wide: 5,161

Quantitative SARS-CoV-2 anti-spike responses to Pfizer-BioNTech and Oxford-AstraZeneca vaccines by previous infection status

infectious diseases more details view paper
  • Downloaded 2,957 times
  • Download rankings, all-time:
    • Site-wide: 5,312
    • In infectious diseases: 987
  • Year to date:
    • Site-wide: 1,009
  • Since beginning of last month:
    • Site-wide: 1,439

SARS-CoV-2 RNA detected in blood samples from patients with COVID-19 is not associated with infectious virus

infectious diseases more details view paper
  • Downloaded 2,629 times
  • Download rankings, all-time:
    • Site-wide: 6,317
    • In infectious diseases: 1,092
  • Year to date:
    • Site-wide: 7,908
  • Since beginning of last month:
    • Site-wide: 24,545

A Systematic Review of Metagenomic Sequencing as a Clinical Diagnostic Tool for Infectious Diseases

infectious diseases more details view paper
  • Downloaded 2,434 times
  • Download rankings, all-time:
    • Site-wide: 7,068
    • In infectious diseases: 1,159
  • Year to date:
    • Site-wide: 4,844
  • Since beginning of last month:
    • Site-wide: 6,024

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

bioinformatics more details view paper
  • Downloaded 2,282 times
  • Download rankings, all-time:
    • Site-wide: 7,784
    • In bioinformatics: 860
  • Year to date:
    • Site-wide: 27,695
  • Since beginning of last month:
    • Site-wide: 50,300

Artificial intelligence driven assessment of routinely collected healthcare data is an effective screening test for COVID-19 in patients presenting to hospital

health informatics more details view paper
  • Downloaded 2,152 times
  • Download rankings, all-time:
    • Site-wide: 8,467
    • In health informatics: 46
  • Year to date:
    • Site-wide: 15,822
  • Since beginning of last month:
    • Site-wide: 19,486

Real-time analysis of nanopore-based metagenomic sequencing from orthopaedic device infection

microbiology more details view paper
  • Downloaded 1,914 times
  • Download rankings, all-time:
    • Site-wide: 10,035
    • In microbiology: 594
  • Year to date:
    • Site-wide: 104,293
  • Since beginning of last month:
    • Site-wide: 105,203

The duration, dynamics and determinants of SARS-CoV-2 antibody responses in individual healthcare workers

infectious diseases more details view paper
  • Downloaded 1,678 times
  • Download rankings, all-time:
    • Site-wide: 12,177
    • In infectious diseases: 1,574
  • Year to date:
    • Site-wide: 12,091
  • Since beginning of last month:
    • Site-wide: 53,199

Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses

infectious diseases more details view paper
  • Downloaded 1,412 times
  • Download rankings, all-time:
    • Site-wide: 15,819
    • In infectious diseases: 1,788
  • Year to date:
    • Site-wide: 2,652
  • Since beginning of last month:
    • Site-wide: 29,790

Stringent thresholds for SARS-CoV-2 IgG assays result in under-detection of cases reporting loss of taste/smell

infectious diseases more details view paper
  • Downloaded 1,395 times
  • Download rankings, all-time:
    • Site-wide: 16,127
    • In infectious diseases: 1,808
  • Year to date:
    • Site-wide: 21,664
  • Since beginning of last month:
    • Site-wide: 64,301

SARS-CoV-2 anti-spike IgG antibody responses after second dose of ChAdOx1 or BNT162b2 in the UK general population

infectious diseases more details view paper
  • Downloaded 806 times
  • Download rankings, all-time:
    • Site-wide: 35,946
    • In infectious diseases: 2,725
  • Year to date:
    • Site-wide: 5,952
  • Since beginning of last month:
    • Site-wide: 425

Anti-spike antibody response to natural SARS-CoV-2 infection in the general population

infectious diseases more details view paper
  • Downloaded 713 times
  • Download rankings, all-time:
    • Site-wide: 42,638
    • In infectious diseases: 2,975
  • Year to date:
    • Site-wide: 7,137
  • Since beginning of last month:
    • Site-wide: 5,648

A cluster randomised trial of the impact of a policy of daily testing for contacts of COVID-19 cases on attendance and COVID-19 transmission in English secondary schools and colleges

infectious diseases more details view paper
  • Downloaded 658 times
  • Download rankings, all-time:
    • Site-wide: 47,484
    • In infectious diseases: 3,118
  • Year to date:
    • Site-wide: 8,040
  • Since beginning of last month:
    • Site-wide: 1,672

RNA polymerase mutations cause cephalosporin resistance in clinical Neisseria gonorrhoeae isolates

microbiology more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 47,665
    • In microbiology: 2,918
  • Year to date:
    • Site-wide: 110,039
  • Since beginning of last month:
    • Site-wide: 141,053

High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing

microbiology more details view paper
  • Downloaded 646 times
  • Download rankings, all-time:
    • Site-wide: 48,596
    • In microbiology: 2,980
  • Year to date:
    • Site-wide: 74,106
  • Since beginning of last month:
    • Site-wide: 84,222

The Clostridioides difficile species problem: global phylogenomic analysis uncovers three ancient, toxigenic, genomospecies

microbiology more details view paper
  • Downloaded 632 times
  • Download rankings, all-time:
    • Site-wide: 49,966
    • In microbiology: 3,080
  • Year to date:
    • Site-wide: 23,850
  • Since beginning of last month:
    • Site-wide: 37,117

Development and Validation of Early Warning Score Systems for COVID-19 Patients

infectious diseases more details view paper
  • Downloaded 492 times
  • Download rankings, all-time:
    • Site-wide: 67,562
    • In infectious diseases: 3,717
  • Year to date:
    • Site-wide: 24,412
  • Since beginning of last month:
    • Site-wide: 36,380

Symptoms and SARS-CoV-2 positivity in the general population in the UK

infectious diseases more details view paper
  • Downloaded 455 times
  • Download rankings, all-time:
    • Site-wide: 73,602
    • In infectious diseases: 3,857
  • Year to date:
    • Site-wide: 13,971
  • Since beginning of last month:
    • Site-wide: 5,641

Optimizing DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae direct from urine samples

microbiology more details view paper
  • Downloaded 440 times
  • Download rankings, all-time:
    • Site-wide: 76,246
    • In microbiology: 5,092
  • Year to date:
    • Site-wide: 133,477
  • Since beginning of last month:
    • Site-wide: 129,379

A role for tetracycline selection in the evolution of Clostridium difficile PCR-ribotype 078

microbiology more details view paper
  • Downloaded 423 times
  • Download rankings, all-time:
    • Site-wide: 79,407
    • In microbiology: 5,312
  • Year to date:
    • Site-wide: 122,731
  • Since beginning of last month:
    • Site-wide: 153,182

Molecular diagnosis of orthopaedic device infection direct from sonication fluid by metagenomic sequencing

microbiology more details view paper
  • Downloaded 418 times
  • Download rankings, all-time:
    • Site-wide: 80,323
    • In microbiology: 5,386
  • Year to date:
    • Site-wide: 148,077
  • Since beginning of last month:
    • Site-wide: 135,128

Monitoring populations at increased risk for SARS-CoV-2 infection in the community

epidemiology more details view paper
  • Downloaded 412 times
  • Download rankings, all-time:
    • Site-wide: 81,589
    • In epidemiology: 3,527
  • Year to date:
    • Site-wide: 16,175
  • Since beginning of last month:
    • Site-wide: 938

Hash-based core genome multi-locus sequencing typing for Clostridium difficile

microbiology more details view paper
  • Downloaded 397 times
  • Download rankings, all-time:
    • Site-wide: 84,366
    • In microbiology: 5,705
  • Year to date:
    • Site-wide: 142,496
  • Since beginning of last month:
    • Site-wide: 146,636

Real-world evaluation of AI driven COVID-19 triage for emergency admissions: External validation & operational assessment of lab-free and high-throughput screening solutions

health informatics more details view paper
  • Downloaded 384 times
  • Download rankings, all-time:
    • Site-wide: 86,935
    • In health informatics: 334
  • Year to date:
    • Site-wide: 17,969
  • Since beginning of last month:
    • Site-wide: 1,209

Probabilistic modelling of effects of antibiotics and calendar time on transmission of healthcare-associated infection

epidemiology more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 118,080
    • In epidemiology: 4,991
  • Year to date:
    • Site-wide: 96,877
  • Since beginning of last month:
    • Site-wide: 99,722

Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopaedic Device Infection

infectious diseases more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 129,378
    • In infectious diseases: 5,355
  • Year to date:
    • Site-wide: 40,465
  • Since beginning of last month:
    • Site-wide: 7,422

Transmission dynamics of SARS-CoV-2 in the hospital setting

infectious diseases more details view paper
  • Downloaded 191 times
  • Download rankings, all-time:
    • Site-wide: 134,333
    • In infectious diseases: 5,519
  • Year to date:
    • Site-wide: 45,579
  • Since beginning of last month:
    • Site-wide: 32,695

K-mer based prediction of Clostridioides difficile relatedness and ribotypes

genomics more details view paper
  • Downloaded 137 times
  • Download rankings, all-time:
    • Site-wide: 146,591
    • In genomics: 7,505
  • Year to date:
    • Site-wide: 65,159
  • Since beginning of last month:
    • Site-wide: 30,902

Enhancing epidemiological investigation of nosocomial SARS-CoV-2 infection with whole genome sequencing: A retrospective cohort study across four hospitals in the UK.

infectious diseases more details view paper
  • Downloaded 106 times
  • Download rankings, all-time:
    • Site-wide: 152,226
    • In infectious diseases: 6,088
  • Year to date:
    • Site-wide: 82,707
  • Since beginning of last month:
    • Site-wide: 62,158

Performance of Core Genome Multilocus Sequence Typing Compared to Capillary-Electrophoresis PCR Ribotyping and SNP Analysis of Clostridioides difficile

molecular biology more details view paper
  • Downloaded 78 times
  • Download rankings, all-time:
    • Site-wide: 155,977
    • In molecular biology: 4,717
  • Year to date:
    • Site-wide: 104,207
  • Since beginning of last month:
    • Site-wide: 78,650

PanLingua

News