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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,456 bioRxiv papers from 319,721 authors.

Author: Jillian F. Banfield

Rankings

  • All-time downloads: 34,202 (rank: 604 out of 319,721)
  • Categories:
    • bioinformatics: 3,696 (rank: 2,052 out of 27,709)
    • ecology: 844 (rank: 2,444 (tie) out of 13,104)
    • genomics: 1,090 (rank: 13,493 (tie) out of 35,644)
    • microbiology: 28,572 (rank: 30 out of 33,301)

Downloads per author, site-wide

Preprints

Large Freshwater Phages with the Potential to Augment Aerobic Methane Oxidation

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Clades of huge phage from across Earth's ecosystems

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Recovery of genomes from metagenomes via a dereplication, aggregation, and scoring strategy

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Accurate and Complete Genomes from Metagenomes

microbiology more details view paper
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    • In microbiology: 56 out of 5,986
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In situ replication rates for uncultivated bacteria in microbial communities

bioinformatics more details view paper
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    • In bioinformatics: 413 out of 7,156
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Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

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Consistent metagenome-derived metrics verify and define bacterial species boundaries

microbiology more details view paper
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    • In microbiology: 172 out of 5,986
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dRep: A tool for fast and accurate genome de-replication that enables tracking of microbial genotypes and improved genome recovery from metagenomes

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Megaphage infect Prevotella and variants are widespread in gut microbiomes

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    • In microbiology: 270 out of 5,986
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Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria that may stimulate TLR4 receptors

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Genome-reconstruction for eukaryotes from complex natural microbial communities

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    • In genomics: 1,189 out of 4,872
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Niche differentiation is spatially and temporally regulated in the rhizosphere

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    • In ecology: 278 out of 3,187
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Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

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    • In microbiology: 540 out of 5,986
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Biological capacities clearly define a major subdivision in Domain Bacteria

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Dramatic expansion of microbial groups that shape the global sulfur cycle

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    • In microbiology: 688 out of 5,986
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Candidate Phyla Radiation Roizmanbacteria from hot springs have novel, unexpectedly abundant, and potentially alternatively functioning CRISPR-Cas systems

microbiology more details view paper
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    • In microbiology: 730 out of 5,986
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Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome

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    • In microbiology: 804 out of 5,986
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InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains

microbiology more details view paper
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    • In microbiology: 812 out of 5,986
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An archaeal symbiont-host association from the deep terrestrial subsurface

microbiology more details view paper
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    • In microbiology: 850 out of 5,986
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Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially processed plant derived carbon

microbiology more details view paper
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    • In microbiology: 985 out of 5,986
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Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles

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  • Downloaded 593 times
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    • In microbiology: 1,003 out of 5,986
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Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes

microbiology more details view paper
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    • In microbiology: 1,005 out of 5,986
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Hydrogen-based metabolism - An ancestral trait in lineages sibling to the Cyanobacteria

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    • In microbiology: 1,084 out of 5,986
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Lateral gene transfer shapes the distribution of RuBisCO among Candidate Phyla Radiation bacteria and DPANN archaea

microbiology more details view paper
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    • In microbiology: 1,124 out of 5,986
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Wide distribution of phage that infect freshwater SAR11 bacteria

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    • In microbiology: 1,335 out of 5,986
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Microbial diversity and metabolic potential in cyanotoxin producing cyanobacterial mats throughout a river network

microbiology more details view paper
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    • In microbiology: 1,388 out of 5,986
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Bacterial secondary metabolite biosynthetic potential in soil varies with phylum, depth, and vegetation type

microbiology more details view paper
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    • In microbiology: 1,403 out of 5,986
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Increased Replication Rates of Dissimilatory Nitrogen-Reducing Bacteria Leads to Decreased Anammox Reactor Performance

microbiology more details view paper
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    • In microbiology: 1,643 out of 5,986
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria

microbiology more details view paper
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    • In microbiology: 1,743 out of 5,986
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Processing of grassland soil C-N compounds into soluble and volatile molecules is depth stratified and mediated by genomically novel bacteria and archaea

microbiology more details view paper
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Functional potential of bacterial strains in the premature infant gut microbiome is associated with gestational age

microbiology more details view paper
  • Downloaded 386 times
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    • In microbiology: 1,987 out of 5,986
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Homologous recombination and transposon propagation shapes the population structure of an organism from the deep subsurface with minimal metabolism

microbiology more details view paper
  • Downloaded 370 times
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    • In microbiology: 2,111 out of 5,986
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Aquatic Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have novel nitrogenase-like gene clusters

microbiology more details view paper
  • Downloaded 360 times
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    • In microbiology: 2,178 out of 5,986
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    • Site-wide: 8,387 out of 73,456
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Unusual metabolism and hypervariation in the genome of a Gracilibacteria (BD1-5) from an oil degrading community

microbiology more details view paper
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Differential gene expression and the importance of regulatory ncRNAs in acidophilic microorganisms

microbiology more details view paper
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Shifts in microbial transcription patterns prior to onset of Necrotizing enterocolitis may indicate low oxygen levels in the gut

microbiology more details view paper
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Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock

microbiology more details view paper
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    • In microbiology: 2,999 out of 5,986
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The rise of diversity in metabolic platforms across the Candidate Phyla Radiation

microbiology more details view paper
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    • In microbiology: 3,206 out of 5,986
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Genome-resolved metagenomics and detailed geochemical speciation analyses yield new insights into microbial mercury cycling in geothermal springs

microbiology more details view paper
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    • In microbiology: 4,278 out of 5,986
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    • Site-wide: 2,009 out of 73,456

Taxonomically and metabolically distinct microbial communities with depth and across a hillslope to riparian zone transect

bioinformatics more details view paper
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    • In bioinformatics: 6,533 out of 7,156
  • Year to date:
    • Site-wide: 38,713 out of 73,456
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