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Author: Daniel McDonald

  • ORCiD: http://orcid.org/0000-0003-0876-9060
  • Most recently observed institution: Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.

Rankings

  • All-time downloads: 25,002 (rank: 6,229 )
  • Categories:
    • bioinformatics: 3,798 (rank: 3,133 )
    • infectious diseases: 1,549 (rank: 15,006 (tie) )
    • microbiology: 6,539 (rank: 1,777 (tie) )
    • molecular biology: 12,325 (rank: 153 (tie) )
    • systems biology: 791 (rank: 5,181 (tie) )

Downloads per author, site-wide

Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

molecular biology more details view paper
  • Downloaded 12,325 times
  • Download rankings, all-time:
    • Site-wide: 557
    • In molecular biology: 8
  • Year to date:
    • Site-wide: 714
  • Since beginning of last month:
    • Site-wide: None

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 3,648 times
  • Download rankings, all-time:
    • Site-wide: 2,932
    • In microbiology: 199
  • Year to date:
    • Site-wide: 14,200
  • Since beginning of last month:
    • Site-wide: 14,327

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

microbiology more details view paper
  • Downloaded 1,879 times
  • Download rankings, all-time:
    • Site-wide: 7,648
    • In microbiology: 421
  • Year to date:
    • Site-wide: 3,680
  • Since beginning of last month:
    • Site-wide: 4,445

Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

bioinformatics more details view paper
  • Downloaded 1,703 times
  • Download rankings, all-time:
    • Site-wide: 8,900
    • In bioinformatics: 1,090
  • Year to date:
    • Site-wide: 13,832
  • Since beginning of last month:
    • Site-wide: 16,047

Species abundance information improves sequence taxonomy classification accuracy

bioinformatics more details view paper
  • Downloaded 1,033 times
  • Download rankings, all-time:
    • Site-wide: 18,815
    • In bioinformatics: 2,266
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Age and sex-dependent patterns of gut microbial diversity in human adults

microbiology more details view paper
  • Downloaded 1,012 times
  • Download rankings, all-time:
    • Site-wide: 19,383
    • In microbiology: 1,090
  • Year to date:
    • Site-wide: 111,037
  • Since beginning of last month:
    • Site-wide: 105,461

Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs

infectious diseases more details view paper
  • Downloaded 831 times
  • Download rankings, all-time:
    • Site-wide: 25,666
    • In infectious diseases: 1,805
  • Year to date:
    • Site-wide: 25,291
  • Since beginning of last month:
    • Site-wide: 22,905

Reference data based insights expand understanding of human metabolomes

systems biology more details view paper
  • Downloaded 791 times
  • Download rankings, all-time:
    • Site-wide: 27,465
    • In systems biology: 602
  • Year to date:
    • Site-wide: 42,831
  • Since beginning of last month:
    • Site-wide: None

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

infectious diseases more details view paper
  • Downloaded 718 times
  • Download rankings, all-time:
    • Site-wide: 31,429
    • In infectious diseases: 2,006
  • Year to date:
    • Site-wide: 4,729
  • Since beginning of last month:
    • Site-wide: 7,633

Revisiting microbe-metabolite interactions: doing better than random

bioinformatics more details view paper
  • Downloaded 597 times
  • Download rankings, all-time:
    • Site-wide: 40,101
    • In bioinformatics: 4,377
  • Year to date:
    • Site-wide: 44,392
  • Since beginning of last month:
    • Site-wide: 43,548

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets

bioinformatics more details view paper
  • Downloaded 465 times
  • Download rankings, all-time:
    • Site-wide: 53,908
    • In bioinformatics: 5,535
  • Year to date:
    • Site-wide: 11,398
  • Since beginning of last month:
    • Site-wide: 11,563

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