Author: Daniel McDonald

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Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

• Downloaded 12,325 times
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  • Site-wide: 557
  • In molecular biology: 8
• Year to date:
  • Site-wide: 714
• Since beginning of last month:
  • Site-wide: None

American Gut: an Open Platform for Citizen-Science Microbiome Research

• Downloaded 3,648 times
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  • Site-wide: 2,932
  • In microbiology: 199
• Year to date:
  • Site-wide: 14,200
• Since beginning of last month:
  • Site-wide: 14,327

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

• Downloaded 1,879 times
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  • Site-wide: 7,648
  • In microbiology: 421
• Year to date:
  • Site-wide: 3,680
• Since beginning of last month:
  • Site-wide: 4,445

Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

• Downloaded 1,703 times
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  • Site-wide: 8,900
  • In bioinformatics: 1,090
• Year to date:
  • Site-wide: 13,832
• Since beginning of last month:
  • Site-wide: 16,047

Species abundance information improves sequence taxonomy classification accuracy

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• Download rankings, all-time:
  • Site-wide: 18,815
  • In bioinformatics: 2,266
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: None

Age and sex-dependent patterns of gut microbial diversity in human adults

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• Download rankings, all-time:
  • Site-wide: 19,383
  • In microbiology: 1,090
• Year to date:
  • Site-wide: 111,037
• Since beginning of last month:
  • Site-wide: 105,461

Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs

• Downloaded 831 times
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  • Site-wide: 25,666
  • In infectious diseases: 1,805
• Year to date:
  • Site-wide: 25,291
• Since beginning of last month:
  • Site-wide: 22,905

Reference data based insights expand understanding of human metabolomes

• Downloaded 791 times
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  • Site-wide: 27,465
  • In systems biology: 602
• Year to date:
  • Site-wide: 42,831
• Since beginning of last month:
  • Site-wide: None

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

• Downloaded 718 times
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  • Site-wide: 31,429
  • In infectious diseases: 2,006
• Year to date:
  • Site-wide: 4,729
• Since beginning of last month:
  • Site-wide: 7,633

Revisiting microbe-metabolite interactions: doing better than random

• Downloaded 597 times
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  • Site-wide: 40,101
  • In bioinformatics: 4,377
• Year to date:
  • Site-wide: 44,392
• Since beginning of last month:
  • Site-wide: 43,548

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets

• Downloaded 465 times
• Download rankings, all-time:
  • Site-wide: 53,908
  • In bioinformatics: 5,535
• Year to date:
  • Site-wide: 11,398
• Since beginning of last month:
  • Site-wide: 11,563