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Author: Daniel McDonald

  • ORCiD: http://orcid.org/0000-0003-0876-9060
  • Most recently observed institution: Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.

Rankings

  • All-time downloads: 22,150 (rank: 5,991 out of 513,392)
  • Categories:
    • bioinformatics: 3,418 (rank: 3,324 (tie) out of 37,058)
    • infectious diseases: 1,008 (rank: 15,658 (tie) out of 32,280)
    • microbiology: 6,034 (rank: 1,655 (tie) out of 52,513)
    • molecular biology: 10,963 (rank: 158 (tie) out of 24,289)
    • systems biology: 727 (rank: 5,124 (tie) out of 12,917)

Downloads per author, site-wide

Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

molecular biology more details view paper
  • Downloaded 10,963 times
  • Download rankings, all-time:
    • Site-wide: 559 out of 119,064
    • In molecular biology: 10 out of 3,634
  • Year to date:
    • Site-wide: 649 out of 119,064
  • Since beginning of last month:
    • Site-wide: 700 out of 119,064

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 3,512 times
  • Download rankings, all-time:
    • Site-wide: 2,656 out of 119,064
    • In microbiology: 179 out of 9,403
  • Year to date:
    • Site-wide: 17,157 out of 119,064
  • Since beginning of last month:
    • Site-wide: 9,634 out of 119,064

Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

bioinformatics more details view paper
  • Downloaded 1,585 times
  • Download rankings, all-time:
    • Site-wide: 8,590 out of 119,064
    • In bioinformatics: 1,116 out of 9,624
  • Year to date:
    • Site-wide: 3,530 out of 119,064
  • Since beginning of last month:
    • Site-wide: 3,791 out of 119,064

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

microbiology more details view paper
  • Downloaded 1,526 times
  • Download rankings, all-time:
    • Site-wide: 9,129 out of 119,064
    • In microbiology: 483 out of 9,403
  • Year to date:
    • Site-wide: 3,708 out of 119,064
  • Since beginning of last month:
    • Site-wide: 2,424 out of 119,064

Species abundance information improves sequence taxonomy classification accuracy

bioinformatics more details view paper
  • Downloaded 1,021 times
  • Download rankings, all-time:
    • Site-wide: 16,607 out of 119,064
    • In bioinformatics: 2,097 out of 9,624
  • Year to date:
    • Site-wide: 34,860 out of 119,064
  • Since beginning of last month:
    • Site-wide: 52,296 out of 119,064

Age and sex-dependent patterns of gut microbial diversity in human adults

microbiology more details view paper
  • Downloaded 996 times
  • Download rankings, all-time:
    • Site-wide: 17,266 out of 119,064
    • In microbiology: 942 out of 9,403
  • Year to date:
    • Site-wide: 49,793 out of 119,064
  • Since beginning of last month:
    • Site-wide: 87,614 out of 119,064

Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs

infectious diseases more details view paper
  • Downloaded 745 times
  • Download rankings, all-time:
    • Site-wide: 26,143 out of 119,064
    • In infectious diseases: 1,587 out of 3,623
  • Year to date:
    • Site-wide: 8,645 out of 119,064
  • Since beginning of last month:
    • Site-wide: 25,757 out of 119,064

Reference data based insights expand understanding of human metabolomes

systems biology more details view paper
  • Downloaded 727 times
  • Download rankings, all-time:
    • Site-wide: 27,074 out of 119,064
    • In systems biology: 632 out of 2,652
  • Year to date:
    • Site-wide: 8,890 out of 119,064
  • Since beginning of last month:
    • Site-wide: 14,558 out of 119,064

Revisiting microbe-metabolite interactions: doing better than random

bioinformatics more details view paper
  • Downloaded 560 times
  • Download rankings, all-time:
    • Site-wide: 38,104 out of 119,064
    • In bioinformatics: 4,262 out of 9,624
  • Year to date:
    • Site-wide: 27,033 out of 119,064
  • Since beginning of last month:
    • Site-wide: 36,395 out of 119,064

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

infectious diseases more details view paper
  • Downloaded 263 times
  • Download rankings, all-time:
    • Site-wide: 78,748 out of 119,064
    • In infectious diseases: 2,670 out of 3,623
  • Year to date:
    • Site-wide: 31,387 out of 119,064
  • Since beginning of last month:
    • Site-wide: 1,162 out of 119,064

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets

bioinformatics more details view paper
  • Downloaded 252 times
  • Download rankings, all-time:
    • Site-wide: 80,844 out of 119,064
    • In bioinformatics: 7,401 out of 9,624
  • Year to date:
    • Site-wide: 33,182 out of 119,064
  • Since beginning of last month:
    • Site-wide: 29,884 out of 119,064

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