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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 72,923 bioRxiv papers from 317,485 authors.

Author: M Watson

Rankings

  • All-time downloads: 16,871 (rank: 2,144 (tie) out of 317,458)
  • Categories:
    • bioinformatics: 6,021 (rank: 975 out of 27,467)
    • genomics: 6,592 (rank: 2,012 out of 35,482)
    • microbiology: 4,258 (rank: 362 (tie) out of 33,011)

Downloads per author, site-wide

Preprints

Metagenomic analysis of the cow, sheep, reindeer and red deer rumen

microbiology more details view paper

No bioRxiv download data for this paper yet.

MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)

bioinformatics more details view paper
  • Downloaded 2,252 times
  • Download rankings, all-time:
    • Site-wide: 2,178 out of 72,924
    • In bioinformatics: 439 out of 7,123
  • Year to date:
    • Site-wide: 27,987 out of 72,924
  • Since beginning of last month:
    • Site-wide: 27,987 out of 72,924

poRe: an R package for the visualization and analysis of nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 1,970 times
  • Download rankings, all-time:
    • Site-wide: 2,747 out of 72,924
    • In bioinformatics: 540 out of 7,123
  • Year to date:
    • Site-wide: 54,784 out of 72,924
  • Since beginning of last month:
    • Site-wide: 54,784 out of 72,924

Assembly of hundreds of microbial genomes from the cow rumen reveals novel microbial species encoding enzymes with roles in carbohydrate metabolism

genomics more details view paper
  • Downloaded 1,774 times
  • Download rankings, all-time:
    • Site-wide: 3,275 out of 72,924
    • In genomics: 626 out of 4,843
  • Year to date:
    • Site-wide: 26,825 out of 72,924
  • Since beginning of last month:
    • Site-wide: 26,825 out of 72,924

The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics

microbiology more details view paper
  • Downloaded 1,668 times
  • Download rankings, all-time:
    • Site-wide: 3,653 out of 72,924
    • In microbiology: 118 out of 5,934
  • Year to date:
    • Site-wide: 13,833 out of 72,924
  • Since beginning of last month:
    • Site-wide: 13,833 out of 72,924

Mind the gaps - ignoring errors in long read assemblies critically affects protein prediction

genomics more details view paper
  • Downloaded 1,634 times
  • Download rankings, all-time:
    • Site-wide: 3,783 out of 72,924
    • In genomics: 697 out of 4,843
  • Year to date:
    • Site-wide: 49,305 out of 72,924
  • Since beginning of last month:
    • Site-wide: 49,305 out of 72,924

A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data

genomics more details view paper
  • Downloaded 1,130 times
  • Download rankings, all-time:
    • Site-wide: 7,046 out of 72,924
    • In genomics: 1,131 out of 4,843
  • Year to date:
    • Site-wide: 62,325 out of 72,924
  • Since beginning of last month:
    • Site-wide: 62,325 out of 72,924

poRe GUIs for parallel and real-time processing of MinION sequence data

bioinformatics more details view paper
  • Downloaded 1,117 times
  • Download rankings, all-time:
    • Site-wide: 7,180 out of 72,924
    • In bioinformatics: 1,290 out of 7,123
  • Year to date:
    • Site-wide: 70,983 out of 72,924
  • Since beginning of last month:
    • Site-wide: 70,983 out of 72,924

A High Resolution Atlas Of Gene Expression In The Domestic Sheep (Ovis aries)

genomics more details view paper
  • Downloaded 1,114 times
  • Download rankings, all-time:
    • Site-wide: 7,210 out of 72,924
    • In genomics: 1,154 out of 4,843
  • Year to date:
    • Site-wide: 16,273 out of 72,924
  • Since beginning of last month:
    • Site-wide: 16,273 out of 72,924

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

microbiology more details view paper
  • Downloaded 1,091 times
  • Download rankings, all-time:
    • Site-wide: 7,436 out of 72,924
    • In microbiology: 317 out of 5,934
  • Year to date:
    • Site-wide: 36,957 out of 72,924
  • Since beginning of last month:
    • Site-wide: 36,957 out of 72,924

An improved pig reference genome sequence to enable pig genetics and genomics research

genomics more details view paper
  • Downloaded 940 times
  • Download rankings, all-time:
    • Site-wide: 9,528 out of 72,924
    • In genomics: 1,435 out of 4,843
  • Year to date:
    • Site-wide: 4,135 out of 72,924
  • Since beginning of last month:
    • Site-wide: 4,135 out of 72,924

Assembly of hundreds of novel bacterial genomes from the chicken caecum

microbiology more details view paper
  • Downloaded 865 times
  • Download rankings, all-time:
    • Site-wide: 10,869 out of 72,924
    • In microbiology: 487 out of 5,934
  • Year to date:
    • Site-wide: 4,563 out of 72,924
  • Since beginning of last month:
    • Site-wide: 4,563 out of 72,924

Visualisation and analysis of RNA-Seq assembly graphs

bioinformatics more details view paper
  • Downloaded 682 times
  • Download rankings, all-time:
    • Site-wide: 15,471 out of 72,924
    • In bioinformatics: 2,416 out of 7,123
  • Year to date:
    • Site-wide: 47,415 out of 72,924
  • Since beginning of last month:
    • Site-wide: 47,415 out of 72,924

Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy

microbiology more details view paper
  • Downloaded 492 times
  • Download rankings, all-time:
    • Site-wide: 24,171 out of 72,924
    • In microbiology: 1,357 out of 5,934
  • Year to date:
    • Site-wide: 26,286 out of 72,924
  • Since beginning of last month:
    • Site-wide: 26,286 out of 72,924

Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

microbiology more details view paper
  • Downloaded 142 times
  • Download rankings, all-time:
    • Site-wide: 62,964 out of 72,924
    • In microbiology: 4,774 out of 5,934
  • Year to date:
    • Site-wide: 54,021 out of 72,924
  • Since beginning of last month:
    • Site-wide: 54,021 out of 72,924

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