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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,239 bioRxiv papers from 267,831 authors.

Author: Mick Watson

Rankings

  • All-time downloads: 15,244 (rank: 1,905 (tie) out of 267,831)
  • Categories:
    • bioinformatics: 5,794 (rank: 793 out of 23,908)
    • genomics: 5,983 (rank: 1,870 out of 31,259)
    • microbiology: 3,467 (rank: 326 out of 27,508)

Downloads per author, site-wide

Preprints

Development of the duodenal, ileal, jejunal and caecal microbiota in chickens

microbiology more details view paper

No bioRxiv download data for this paper yet.

MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)

bioinformatics more details view paper
  • Downloaded 2,146 times
  • Download rankings, all-time:
    • Site-wide: 1,895 out of 60,239
    • In bioinformatics: 389 out of 6,078
  • Year to date:
    • Site-wide: 10,193 out of 60,239
  • Since beginning of last month:
    • Site-wide: 15,603 out of 60,239

poRe: an R package for the visualization and analysis of nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 1,931 times
  • Download rankings, all-time:
    • Site-wide: 2,291 out of 60,239
    • In bioinformatics: 474 out of 6,078
  • Year to date:
    • Site-wide: 35,384 out of 60,239
  • Since beginning of last month:
    • Site-wide: 38,749 out of 60,239

Assembly of hundreds of microbial genomes from the cow rumen reveals novel microbial species encoding enzymes with roles in carbohydrate metabolism

genomics more details view paper
  • Downloaded 1,699 times
  • Download rankings, all-time:
    • Site-wide: 2,856 out of 60,239
    • In genomics: 572 out of 4,181
  • Year to date:
    • Site-wide: 29,974 out of 60,239
  • Since beginning of last month:
    • Site-wide: 29,328 out of 60,239

Mind the gaps - ignoring errors in long read assemblies critically affects protein prediction

genomics more details view paper
  • Downloaded 1,577 times
  • Download rankings, all-time:
    • Site-wide: 3,215 out of 60,239
    • In genomics: 624 out of 4,181
  • Year to date:
    • Site-wide: 7,416 out of 60,239
  • Since beginning of last month:
    • Site-wide: 8,423 out of 60,239

The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics

microbiology more details view paper
  • Downloaded 1,501 times
  • Download rankings, all-time:
    • Site-wide: 3,499 out of 60,239
    • In microbiology: 101 out of 4,826
  • Year to date:
    • Site-wide: 2,112 out of 60,239
  • Since beginning of last month:
    • Site-wide: 9,398 out of 60,239

A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data

genomics more details view paper
  • Downloaded 1,101 times
  • Download rankings, all-time:
    • Site-wide: 5,844 out of 60,239
    • In genomics: 979 out of 4,181
  • Year to date:
    • Site-wide: 47,090 out of 60,239
  • Since beginning of last month:
    • Site-wide: 53,963 out of 60,239

poRe GUIs for parallel and real-time processing of MinION sequence data

bioinformatics more details view paper
  • Downloaded 1,091 times
  • Download rankings, all-time:
    • Site-wide: 5,942 out of 60,239
    • In bioinformatics: 1,121 out of 6,078
  • Year to date:
    • Site-wide: 50,234 out of 60,239
  • Since beginning of last month:
    • Site-wide: 52,120 out of 60,239

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

microbiology more details view paper
  • Downloaded 1,038 times
  • Download rankings, all-time:
    • Site-wide: 6,452 out of 60,239
    • In microbiology: 250 out of 4,826
  • Year to date:
    • Site-wide: 2,773 out of 60,239
  • Since beginning of last month:
    • Site-wide: 16,197 out of 60,239

A High Resolution Atlas Of Gene Expression In The Domestic Sheep (Ovis aries)

genomics more details view paper
  • Downloaded 1,038 times
  • Download rankings, all-time:
    • Site-wide: 6,444 out of 60,239
    • In genomics: 1,064 out of 4,181
  • Year to date:
    • Site-wide: 23,146 out of 60,239
  • Since beginning of last month:
    • Site-wide: 18,747 out of 60,239

Visualisation and analysis of RNA-Seq assembly graphs

bioinformatics more details view paper
  • Downloaded 626 times
  • Download rankings, all-time:
    • Site-wide: 13,737 out of 60,239
    • In bioinformatics: 2,210 out of 6,078
  • Year to date:
    • Site-wide: 8,503 out of 60,239
  • Since beginning of last month:
    • Site-wide: 12,547 out of 60,239

An improved pig reference genome sequence to enable pig genetics and genomics research

genomics more details view paper
  • Downloaded 568 times
  • Download rankings, all-time:
    • Site-wide: 15,667 out of 60,239
    • In genomics: 1,989 out of 4,181
  • Year to date:
    • Site-wide: 3,495 out of 60,239
  • Since beginning of last month:
    • Site-wide: 2,960 out of 60,239

Assembly of hundreds of novel bacterial genomes from the chicken caecum

microbiology more details view paper
  • Downloaded 519 times
  • Download rankings, all-time:
    • Site-wide: 17,612 out of 60,239
    • In microbiology: 913 out of 4,826
  • Year to date:
    • Site-wide: 4,057 out of 60,239
  • Since beginning of last month:
    • Site-wide: 3,092 out of 60,239

Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy

microbiology more details view paper
  • Downloaded 409 times
  • Download rankings, all-time:
    • Site-wide: 23,321 out of 60,239
    • In microbiology: 1,290 out of 4,826
  • Year to date:
    • Site-wide: 20,929 out of 60,239
  • Since beginning of last month:
    • Site-wide: 13,069 out of 60,239

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