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Author: Mingyao Li

Rankings

  • All-time downloads: 21,869 (rank: 1,668 out of 333,875)
  • Categories:
    • bioinformatics: 5,870 (rank: 1,091 (tie) out of 28,770)
    • cell biology: 3,116 (rank: 734 (tie) out of 23,725)
    • genetics: 1,821 (rank: 7,387 (tie) out of 32,371)
    • genomics: 11,062 (rank: 1,062 out of 36,824)

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Preprints

SAVER: Gene expression recovery for UMI-based single cell RNA sequencing

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Deep learning enables accurate clustering and batch effect removal in single-cell RNA-seq analysis

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Comprehensive single cell RNAseq analysis of the kidney reveals novel cell types and unexpected cell plasticity

cell biology more details view paper
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Gene Expression Distribution Deconvolution in Single Cell RNA Sequencing

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Bulk Tissue Cell Type Deconvolution with Multi-Subject Single-Cell Expression Reference

bioinformatics more details view paper
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Accounting For Technical Noise In Single-Cell RNA Sequencing Analysis

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Modeling allele-specific gene expression by single-cell RNA sequencing

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Integrative single-cell and bulk RNA-seq analysis in human retina identified cell type-specific composition and gene expression changes for age-related macular degeneration

genomics more details view paper
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LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data

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HadoopCNV: A Dynamic Programming Imputation Algorithm To Detect Copy Number Variants From Sequencing Data

bioinformatics more details view paper
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    • Site-wide: 46,617 out of 76,979

Pathologic gene network rewiring implicates PPP1R3A as a central cardioprotective factor in pressure overload heart failure

genomics more details view paper
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    • In genomics: 1,527 out of 5,061
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Single cell transcriptomics identifies a unique adipocyte population that regulates bone marrow environment

cell biology more details view paper
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    • In cell biology: 620 out of 3,825
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    • Site-wide: 5,055 out of 76,979
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Detecting differential alternative splicing events in scRNA-seq with or without UMIs

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    • In bioinformatics: 2,512 out of 7,436
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    • Site-wide: 12,422 out of 76,979

Profiling APOL1 Nephropathy Risk Variants in Genome-Edited Kidney Organoids with Single-Cell Transcriptomics

genomics more details view paper
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    • In genomics: 3,274 out of 5,061
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    • Site-wide: 20,426 out of 76,979

Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis

genomics more details view paper
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    • Site-wide: 41,079 out of 76,979
    • In genomics: 3,665 out of 5,061
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    • Site-wide: 1,953 out of 76,979
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    • Site-wide: 1,041 out of 76,979

ASEP: gene-based detection of allele-specific expression in a population by RNA-seq

genomics more details view paper
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