Author: Piero Carninci

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Preprints

The Human Cell Atlas

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  • Site-wide: 542
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Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

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  • Site-wide: 4,425
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  • Site-wide: 31,993
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  • Site-wide: 31,993

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

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  • In genomics: 705
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RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

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  • Site-wide: 8,321
  • In genomics: 938
• Year to date:
  • Site-wide: 32,238
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  • Site-wide: 32,238

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

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  • Site-wide: 11,753
  • In genomics: 1,303
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AGO1 in association with NEAT1 lncRNA contributes to nuclear and 3D chromatin architecture in human cells

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  • Site-wide: 14,533
  • In genomics: 1,541
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  • Site-wide: 60,383
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Recounting the FANTOM Cage Associated Transcriptome

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  • Site-wide: 16,447
  • In genomics: 1,729
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  • Site-wide: 17,098
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Dynamics and Topology of Human Transcribed Cis-regulatory Elements

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  • Site-wide: 18,832
  • In genomics: 1,935
• Year to date:
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  • Site-wide: 56,734

Decoding neuronal diversity by single-cell Convert-seq

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  • Site-wide: 19,277
  • In neuroscience: 2,461
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  • Site-wide: 26,371
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  • Site-wide: 26,371

SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA

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  • Site-wide: 19,874
  • In genomics: 2,018
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  • Site-wide: 47,477
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  • Site-wide: 47,477

Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan

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  • Site-wide: 20,797
  • In genomics: 2,092
• Year to date:
  • Site-wide: 36,189
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  • Site-wide: 36,189

SINEUP long non-coding RNA acts via PTBP1 and HNRNPK to promote translational initiation assemblies

• Downloaded 897 times
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  • Site-wide: 22,880
  • In molecular biology: 629
• Year to date:
  • Site-wide: 95,407
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Functional annotation of human long noncoding RNAs using chromatin conformation data

• Downloaded 798 times
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  • Site-wide: 26,968
  • In genomics: 2,543
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  • Site-wide: 613
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Evidence of transcription at polyT short tandem repeats

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  • Site-wide: 27,624
  • In genomics: 2,592
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  • Site-wide: 36,244
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Non-allelic homologous recombination of Alu and LINE-1 elements generates somatic complexity in human genomes.

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  • Site-wide: 30,850
  • In genomics: 2,794
• Year to date:
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  • Site-wide: 13,563

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

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  • Site-wide: 34,648
  • In genomics: 3,041
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  • Site-wide: 80,676
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Dynamics Of Cardiomyocyte Transcriptome And Chromatin Landscape Demarcates Key Events Of Heart Development

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  • Site-wide: 39,571
  • In genomics: 3,332
• Year to date:
  • Site-wide: 95,201
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  • Site-wide: 95,201

Comprehensive characterisation of molecular host-pathogen interactions in influenza A virus-infected human macrophages

• Downloaded 549 times
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  • Site-wide: 44,215
  • In immunology: 1,194
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  • Site-wide: 70,724
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  • Site-wide: 70,724

A role for YY1 in sex-biased transcription revealed through X-linked promoter activity and allelic binding analyses

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  • Site-wide: 45,811
  • In genomics: 3,708
• Year to date:
  • Site-wide: 97,453
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  • Site-wide: 97,453

Predicting cell-type-specific non-coding RNA transcription from genome sequence

• Downloaded 487 times
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  • Site-wide: 50,900
  • In genomics: 4,007
• Year to date:
  • Site-wide: 32,709
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  • Site-wide: 32,709

Intertwined canonical and non-canonical initiation in dual promoters are pervasive and differentially regulate Polymerase II transcription

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  • Site-wide: 51,682
  • In genomics: 4,044
• Year to date:
  • Site-wide: 109,661
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  • Site-wide: 109,661

LETR1 is a lymphatic endothelial-specific lncRNA that governs cell proliferation and migration through KLF4 and SEMA3C

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  • Site-wide: 52,352
  • In genomics: 4,084
• Year to date:
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The piRNA pathway sustains adult neurogenesis by repressing protein synthesis

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  • Site-wide: 64,772
  • In neuroscience: 9,855
• Year to date:
  • Site-wide: 40,943
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  • Site-wide: 40,943

Antisense ncRNAs during early vertebrate development are divided in groups with distinct features

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  • Site-wide: 67,933
  • In genomics: 4,778
• Year to date:
  • Site-wide: 52,474
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  • Site-wide: 52,474

Machine-driven parameter optimisation of biochemical reactions

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  • Site-wide: 77,778
  • In molecular biology: 2,295
• Year to date:
  • Site-wide: 83,272
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  • Site-wide: 83,272

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

• Downloaded 289 times
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  • Site-wide: 82,326
  • In genomics: 5,345
• Year to date:
  • Site-wide: 33,910
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  • Site-wide: 33,910

Inducing Human Retinal Pigment Epithelium-like Cells from Somatic Tissue

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  • Site-wide: 84,748
  • In bioengineering: 1,589
• Year to date:
  • Site-wide: 29,015
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  • Site-wide: 29,015

Low Quantity single strand CAGE (LQ-ssCAGE) maps regulatory enhancers and promoters

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  • Site-wide: 89,169
  • In genomics: 5,606
• Year to date:
  • Site-wide: 73,738
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  • Site-wide: 73,738

Single-cell transcriptomics, scRNA-Seq and C1 CAGE discovered distinct phases of pluripotency during naïve-to-primed conversion in mice

• Downloaded 254 times
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  • Site-wide: 89,838
  • In genomics: 5,625
• Year to date:
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