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Author: Daniel J Gaffney

Rankings

  • All-time downloads: 21,936 (rank: 2,557 out of 396,059)
  • Categories:
    • bioinformatics: 2,178 (rank: 5,117 (tie) out of 33,591)
    • genetics: 1,898 (rank: 7,885 (tie) out of 36,261)
    • genomics: 17,860 (rank: 508 out of 42,054)

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Preprints

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

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    • Site-wide: 10,863 out of 92,755

Shared genetic effects on chromatin and gene expression reveal widespread enhancer priming in immune response

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    • Site-wide: 16,483 out of 92,755

Common genetic variation drives molecular heterogeneity in human iPSCs

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Molecular and functional variation in iPSC-derived sensory neurons

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    • In genomics: 479 out of 5,845
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A map of transcriptional heterogeneity and regulatory variation in human microglia

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    • In genomics: 508 out of 5,845
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    • Site-wide: 1,762 out of 92,755

souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
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Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

genetics more details view paper
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High resolution genetic mapping of causal regulatory interactions in the human genome

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    • Site-wide: 88,779 out of 92,755

Genetic effects on promoter usage are highly context-specific and contribute to complex traits

genomics more details view paper
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    • Site-wide: 13,004 out of 92,755
    • In genomics: 1,753 out of 5,845
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    • Site-wide: 55,964 out of 92,755
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    • Site-wide: 56,870 out of 92,755

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