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Author: Marcel Reinders

Rankings

  • All-time downloads: 8,320 (rank: 24,119 (tie) )
  • Categories:
    • bioinformatics: 6,354 (rank: 1,734 )
    • genetic and genomic medicine: 183 (rank: 8,400 (tie) )
    • genomics: 490 (rank: 35,503 (tie) )
    • microbiology: 678 (rank: 20,565 (tie) )
    • neuroscience: 615 (rank: 37,014 (tie) )

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Preprints

The power of universal contextualised protein embeddings in cross-species protein function prediction

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Scalable multi whole-genome alignment using recursive exact matching

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  • Downloaded 1,138 times
  • Download rankings, all-time:
    • Site-wide: 17,807
    • In bioinformatics: 2,122
  • Year to date:
    • Site-wide: 78,257
  • Since beginning of last month:
    • Site-wide: 104,084

Predicting clinical drug response from model systems by non-linear subspace-based transfer learning

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  • Downloaded 954 times
  • Download rankings, all-time:
    • Site-wide: 23,039
    • In bioinformatics: 2,715
  • Year to date:
    • Site-wide: 9,694
  • Since beginning of last month:
    • Site-wide: 4,678

Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function

bioinformatics more details view paper
  • Downloaded 875 times
  • Download rankings, all-time:
    • Site-wide: 26,101
    • In bioinformatics: 3,042
  • Year to date:
    • Site-wide: 38,723
  • Since beginning of last month:
    • Site-wide: 61,391

SCHNEL: Scalable clustering of high dimensional single-cell data

bioinformatics more details view paper
  • Downloaded 779 times
  • Download rankings, all-time:
    • Site-wide: 30,769
    • In bioinformatics: 3,488
  • Year to date:
    • Site-wide: 41,612
  • Since beginning of last month:
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SpaGE: Spatial Gene Enhancement using scRNA-seq

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  • Downloaded 735 times
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    • Site-wide: 33,342
    • In bioinformatics: 3,721
  • Year to date:
    • Site-wide: 55,167
  • Since beginning of last month:
    • Site-wide: 73,896

Nucleus Specific Expression In The Multinucleated Mushroom-Forming Fungus Agaricus bisporus Reveals Different Nuclear Regulatory Programs

microbiology more details view paper
  • Downloaded 678 times
  • Download rankings, all-time:
    • Site-wide: 37,123
    • In microbiology: 2,217
  • Year to date:
    • Site-wide: 91,944
  • Since beginning of last month:
    • Site-wide: 122,250

Interactive Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbor Embedding Reveals Rare Cell Types

bioinformatics more details view paper
  • Downloaded 653 times
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    • Site-wide: 39,046
    • In bioinformatics: 4,264
  • Year to date:
    • Site-wide: 107,875
  • Since beginning of last month:
    • Site-wide: 119,865

Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease

neuroscience more details view paper
  • Downloaded 615 times
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    • Site-wide: 42,134
    • In neuroscience: 5,991
  • Year to date:
    • Site-wide: 91,351
  • Since beginning of last month:
    • Site-wide: 69,227

Variants in RNA-Seq data show a continued mutation rate during strain preservation of Schizophyllum commune

genomics more details view paper
  • Downloaded 490 times
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    • Site-wide: 55,452
    • In genomics: 4,208
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    • Site-wide: 52,144
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    • Site-wide: 66,741

Untangling biological factors influencing trajectory inference from single cell data

bioinformatics more details view paper
  • Downloaded 433 times
  • Download rankings, all-time:
    • Site-wide: 63,103
    • In bioinformatics: 6,198
  • Year to date:
    • Site-wide: 86,891
  • Since beginning of last month:
    • Site-wide: 73,351

Cholinergic circuit genes in the healthy brain are differentially expressed in regions that exhibit gray matter loss in Parkinson's disease

bioinformatics more details view paper
  • Downloaded 258 times
  • Download rankings, all-time:
    • Site-wide: 96,405
    • In bioinformatics: 8,378
  • Year to date:
    • Site-wide: 125,983
  • Since beginning of last month:
    • Site-wide: 83,831

Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequenc-ing data analysis

bioinformatics more details view paper
  • Downloaded 220 times
  • Download rankings, all-time:
    • Site-wide: 105,009
    • In bioinformatics: 8,883
  • Year to date:
    • Site-wide: 44,601
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    • Site-wide: 74,461

The effect of Alzheimer's disease-associated genetic variants on longevity

genetic and genomic medicine more details view paper
  • Downloaded 183 times
  • Download rankings, all-time:
    • Site-wide: 113,388
    • In genetic and genomic medicine: 534
  • Year to date:
    • Site-wide: 15,772
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    • Site-wide: 28,880

Transcriptomic signatures associated with regional cortical thickness changes in Parkinson's disease

bioinformatics more details view paper
  • Downloaded 180 times
  • Download rankings, all-time:
    • Site-wide: 113,939
    • In bioinformatics: 9,428
  • Year to date:
    • Site-wide: 113,098
  • Since beginning of last month:
    • Site-wide: 129,962

VNTR prediction on sequence characteristics using long-read annotation and validation by short-read pileup

bioinformatics more details view paper
  • Downloaded 129 times
  • Download rankings, all-time:
    • Site-wide: 124,831
    • In bioinformatics: 9,989
  • Year to date:
    • Site-wide: 89,559
  • Since beginning of last month:
    • Site-wide: 80,911

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