Author: Alessandro Sette

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Preprints

Immunological memory to SARS-CoV-2 assessed for up to eight months after infection

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Negligible impact of SARS-CoV-2 variants on CD4+ and CD8+ T cell reactivity in COVID-19 exposed donors and vaccinees.

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Phenotype of SARS-CoV-2-specific T-cells in COVID-19 patients with acute respiratory distress syndrome

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Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

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Interim Report: Safety And Immunogenicity Of An Inactivated Vaccine Against Sars-Cov-2 In Healthy Chilean Adults In A Phase 3 Clinical Trial

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Single-cell transcriptomic analysis of SARS-CoV-2 reactive CD4+ T cells

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Rapid induction of antigen-specific CD4+ T cells guides coordinated humoral and cellular immune responses to SARS-CoV-2 mRNA vaccination

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T cell assays differentiate clinical and subclinical SARS-CoV-2 infections from cross-reactive antiviral responses

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The RBD Of The Spike Protein Of SARS-Group Coronaviruses Is A Highly Specific Target Of SARS-CoV-2 Antibodies But Not Other Pathogenic Human and Animal Coronavirus Antibodies

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Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

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Three adjacent nucleotide changes spanning two residues in SARS-CoV-2 nucleoprotein: possible homologous recombination from the transcription-regulating sequence

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SARS-CoV-2 infection induces germinal center responses with robust stimulation of CD4 T follicular helper cells in rhesus macaques

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Evidence that recurrent Group A streptococcus tonsillitis is an immunosusceptibility disease involving antibody deficiency and aberrant Tfh cells

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A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer

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No cell is an island: circulating T cell:monocyte complexes are markers of immune perturbations

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Immune memory in mild COVID-19 patients and unexposed donors from India reveals persistent T cell responses after SARS-CoV-2 infection

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Footprints of antigen processing boost MHC class II natural ligand binding predictions

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  • Site-wide: 35,093
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Benchmarking predictions of MHC class I restricted T cell epitopes

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Differential T cell reactivity to seasonal coronaviruses and SARS-CoV-2 in community and health care workers

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PD-1 blockade exacerbates Mycobacterium tuberculosis infection in rhesus macaques

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Immuno-proteomic interrogation of dengue infection reveals novel HLA haplotype-specific MHC-I antigens

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The challenge of distinguishing cell-cell complexes from singlet cells in non-imaging flow cytometry and single-cell sorting

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DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

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Antigen-specific induction of CD4+CD8αα+ intraepithelial T lymphocytes by Bacteroidetes species

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TCRMatch: Predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors

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Identification and characterization of CD4+ T cell epitopes after Shingrix vaccination

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Profile of SARS-CoV-2-specific CD4 T cell response: Relationship with disease severity and impact of HIV-1 and active Mycobacterium tuberculosis co-infection

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T cell responses induced by attenuated flavivirus vaccination are specific and show limited cross-reactivity with other flavivirus species.

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Limited recognition of Mycobacterium tuberculosis-infected macrophages by polyclonal CD4 and CD8 T cells from the lungs of infected mice

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A system-view of B. pertussis booster vaccine responses in adults primed with whole-cell vs. acellular vaccine in infancy

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Combined assessment of MHC binding and antigen expression improves T cell epitope predictions

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  • In bioinformatics: 9,594
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Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5

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