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Author: Bjoern Peters

  • ORCiD: http://orcid.org/0000-0002-8457-6693
  • Most recently observed institution: La Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA. University of California, San Diego (UCSD), La Jolla, CA 92037, USA

Rankings

  • All-time downloads: 117,561 (rank: 941 )
  • Categories:
    • bioinformatics: 11,976 (rank: 653 )
    • immunology: 105,309 (rank: 28 )
    • systems biology: 276 (rank: 12,660 (tie) )

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Preprints

Transcriptomics of acute DENV-specific CD8+ T cells does not support qualitative differences as drivers of disease severity.

allergy and immunology more details view paper

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Immunological memory to SARS-CoV-2 assessed for up to eight months after infection

immunology more details view paper
  • Downloaded 68,391 times
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    • Site-wide: 93
    • In immunology: 2
  • Year to date:
    • Site-wide: 115
  • Since beginning of last month:
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Negligible impact of SARS-CoV-2 variants on CD4+ and CD8+ T cell reactivity in COVID-19 exposed donors and vaccinees.

immunology more details view paper
  • Downloaded 24,994 times
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    • Site-wide: 312
    • In immunology: 18
  • Year to date:
    • Site-wide: 68
  • Since beginning of last month:
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NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

bioinformatics more details view paper
  • Downloaded 4,910 times
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    • Site-wide: 2,477
    • In bioinformatics: 197
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    • Site-wide: 4,248
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Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

immunology more details view paper
  • Downloaded 4,675 times
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    • Site-wide: 2,630
    • In immunology: 90
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    • Site-wide: 24,731
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Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

immunology more details view paper
  • Downloaded 2,590 times
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    • Site-wide: 6,067
    • In immunology: 208
  • Year to date:
    • Site-wide: 1,753
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NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

bioinformatics more details view paper
  • Downloaded 2,187 times
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    • In bioinformatics: 875
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MOGSA: integrative single sample gene-set analysis of multiple omics data

bioinformatics more details view paper
  • Downloaded 1,937 times
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    • Site-wide: 9,299
    • In bioinformatics: 1,056
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Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

bioinformatics more details view paper
  • Downloaded 1,212 times
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    • Site-wide: 18,705
    • In bioinformatics: 2,134
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A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer

immunology more details view paper
  • Downloaded 899 times
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    • Site-wide: 28,920
    • In immunology: 940
  • Year to date:
    • Site-wide: 146,665
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    • Site-wide: None

No cell is an island: circulating T cell:monocyte complexes are markers of immune perturbations

immunology more details view paper
  • Downloaded 832 times
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    • Site-wide: 32,209
    • In immunology: 1,026
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    • Site-wide: 89,049
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    • Site-wide: 107,306

Footprints of antigen processing boost MHC class II natural ligand binding predictions

immunology more details view paper
  • Downloaded 730 times
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    • Site-wide: 38,692
    • In immunology: 1,214
  • Year to date:
    • Site-wide: 111,617
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    • Site-wide: 37,627

Benchmarking predictions of MHC class I restricted T cell epitopes

immunology more details view paper
  • Downloaded 720 times
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    • Site-wide: 39,402
    • In immunology: 1,238
  • Year to date:
    • Site-wide: 100,552
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    • Site-wide: 117,790

The challenge of distinguishing cell-cell complexes from singlet cells in non-imaging flow cytometry and single-cell sorting

immunology more details view paper
  • Downloaded 553 times
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    • Site-wide: 55,249
    • In immunology: 1,686
  • Year to date:
    • Site-wide: 51,369
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    • Site-wide: 20,647

TCRMatch: Predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors

immunology more details view paper
  • Downloaded 493 times
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    • Site-wide: 63,078
    • In immunology: 1,917
  • Year to date:
    • Site-wide: 29,344
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    • Site-wide: None

DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

bioinformatics more details view paper
  • Downloaded 490 times
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    • Site-wide: 63,592
    • In bioinformatics: 6,192
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    • Site-wide: 103,970
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Gene Regulatory Cross Networks: Inferring Gene Level Cell-to-Cell Communications of Immune Cells

bioinformatics more details view paper
  • Downloaded 375 times
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    • Site-wide: 83,005
    • In bioinformatics: 7,503
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    • Site-wide: 149,008
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A system-view of B. pertussis booster vaccine responses in adults primed with whole-cell vs. acellular vaccine in infancy

systems biology more details view paper
  • Downloaded 276 times
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    • Site-wide: 105,055
    • In systems biology: 2,349
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    • Site-wide: 93,381
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    • Site-wide: 28,683

Uncovering the cell type specificity of blood sample derived gene signatures using RNA expression data

bioinformatics more details view paper
  • Downloaded 236 times
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    • Site-wide: 114,919
    • In bioinformatics: 9,500
  • Year to date:
    • Site-wide: 130,710
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    • Site-wide: 117,056

Transcriptional analysis of peripheral memory T cells reveals Parkinson's disease-specific gene signatures

immunology more details view paper
  • Downloaded 224 times
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    • Site-wide: 117,976
    • In immunology: 3,493
  • Year to date:
    • Site-wide: 28,220
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    • Site-wide: 87,272

A curated collection of human vaccination response signatures

bioinformatics more details view paper
  • Downloaded 213 times
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    • Site-wide: 120,607
    • In bioinformatics: 9,800
  • Year to date:
    • Site-wide: 30,020
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    • Site-wide: 131,583

Combined assessment of MHC binding and antigen expression improves T cell epitope predictions

bioinformatics more details view paper
  • Downloaded 204 times
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    • Site-wide: 122,927
    • In bioinformatics: 9,908
  • Year to date:
    • Site-wide: 71,590
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Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5

immunology more details view paper
  • Downloaded 193 times
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    • Site-wide: 125,575
    • In immunology: 3,720
  • Year to date:
    • Site-wide: 87,967
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    • Site-wide: 34,501

OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies

bioinformatics more details view paper
  • Downloaded 136 times
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    • Site-wide: 138,712
    • In bioinformatics: 10,766
  • Year to date:
    • Site-wide: 50,433
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    • Site-wide: 16,785

Towards the prediction of non-peptidic epitopes

bioinformatics more details view paper
  • Downloaded 76 times
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    • Site-wide: 149,200
    • In bioinformatics: 11,327
  • Year to date:
    • Site-wide: 85,657
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    • Site-wide: 87,240

CD4+CCR6+ T cells dominate the BCG-induced transcriptional signature

immunology more details view paper
  • Downloaded 15 times
  • Download rankings, all-time:
    • Site-wide: 153,491
    • In immunology: 4,634
  • Year to date:
    • Site-wide: 153,006
  • Since beginning of last month:
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