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Author: Bjoern Peters

Rankings

  • All-time downloads: 102,992 (rank: 1,131 )
  • Categories:
    • bioinformatics: 10,551 (rank: 703 )
    • immunology: 92,193 (rank: 23 )
    • systems biology: 248 (rank: 11,949 (tie) )

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Preprints

A curated collection of human vaccination response signatures

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Immunological memory to SARS-CoV-2 assessed for up to eight months after infection

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    • Site-wide: 81
    • In immunology: 2
  • Year to date:
    • Site-wide: 63
  • Since beginning of last month:
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Negligible impact of SARS-CoV-2 variants on CD4+ and CD8+ T cell reactivity in COVID-19 exposed donors and vaccinees.

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  • Downloaded 16,985 times
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    • Site-wide: 405
    • In immunology: 16
  • Year to date:
    • Site-wide: 41
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Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

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  • Downloaded 4,561 times
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    • Site-wide: 2,282
    • In immunology: 60
  • Year to date:
    • Site-wide: 19,871
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    • Site-wide: 20,453

NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

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  • Downloaded 4,364 times
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    • Site-wide: 2,430
    • In bioinformatics: 214
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    • Site-wide: 6,673
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    • Site-wide: 6,671

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

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  • Downloaded 2,309 times
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    • Site-wide: 6,111
    • In immunology: 181
  • Year to date:
    • Site-wide: 845
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NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

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  • Downloaded 2,141 times
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    • Site-wide: 6,810
    • In bioinformatics: 801
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    • Site-wide: 66,806
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    • Site-wide: 66,108

MOGSA: integrative single sample gene-set analysis of multiple omics data

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  • Downloaded 1,847 times
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    • Site-wide: 8,494
    • In bioinformatics: 1,022
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    • Site-wide: 20,677
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    • Site-wide: 16,672

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

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  • Downloaded 1,007 times
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    • Site-wide: 20,912
    • In bioinformatics: 2,492
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    • Site-wide: 15,390
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A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer

immunology more details view paper
  • Downloaded 889 times
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    • Site-wide: 25,084
    • In immunology: 732
  • Year to date:
    • Site-wide: 117,363
  • Since beginning of last month:
    • Site-wide: 116,905

No cell is an island: circulating T cell:monocyte complexes are markers of immune perturbations

immunology more details view paper
  • Downloaded 801 times
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    • Site-wide: 28,963
    • In immunology: 832
  • Year to date:
    • Site-wide: 63,019
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    • Site-wide: 77,607

Benchmarking predictions of MHC class I restricted T cell epitopes

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  • Downloaded 707 times
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    • Site-wide: 34,443
    • In immunology: 984
  • Year to date:
    • Site-wide: 55,121
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    • Site-wide: 93,299

Footprints of antigen processing boost MHC class II natural ligand binding predictions

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  • Downloaded 703 times
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    • Site-wide: 34,743
    • In immunology: 991
  • Year to date:
    • Site-wide: 92,184
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    • Site-wide: 94,984

The challenge of distinguishing cell-cell complexes from singlet cells in non-imaging flow cytometry and single-cell sorting

immunology more details view paper
  • Downloaded 485 times
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    • Site-wide: 55,048
    • In immunology: 1,548
  • Year to date:
    • Site-wide: 41,890
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    • Site-wide: 45,376

DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

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  • Downloaded 459 times
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    • Site-wide: 58,477
    • In bioinformatics: 5,862
  • Year to date:
    • Site-wide: 86,137
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    • Site-wide: 94,249

TCRMatch: Predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors

immunology more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 60,984
    • In immunology: 1,700
  • Year to date:
    • Site-wide: 15,253
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    • Site-wide: 23,805

Gene Regulatory Cross Networks: Inferring Gene Level Cell-to-Cell Communications of Immune Cells

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  • Downloaded 362 times
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    • Site-wide: 73,735
    • In bioinformatics: 6,914
  • Year to date:
    • Site-wide: 131,206
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    • Site-wide: 133,427

A system-view of B. pertussis booster vaccine responses in adults primed with whole-cell vs. acellular vaccine in infancy

systems biology more details view paper
  • Downloaded 248 times
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    • Site-wide: 97,049
    • In systems biology: 2,261
  • Year to date:
    • Site-wide: 64,535
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    • Site-wide: 101,748

Uncovering the cell type specificity of blood sample derived gene signatures using RNA expression data

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  • Downloaded 212 times
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    • Site-wide: 105,257
    • In bioinformatics: 8,900
  • Year to date:
    • Site-wide: 124,238
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    • Site-wide: 130,462

Combined assessment of MHC binding and antigen expression improves T cell epitope predictions

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  • Downloaded 159 times
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    • Site-wide: 116,610
    • In bioinformatics: 9,567
  • Year to date:
    • Site-wide: 54,619
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Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5

immunology more details view paper
  • Downloaded 157 times
  • Download rankings, all-time:
    • Site-wide: 117,224
    • In immunology: 3,328
  • Year to date:
    • Site-wide: 68,578
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    • Site-wide: 65,705

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