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Author: Bjoern Peters

Rankings

  • All-time downloads: 135,256 (rank: 1,272 )
  • Categories:
    • allergy and immunology: 616 (rank: 2,941 )
    • bioinformatics: 15,592 (rank: 651 )
    • cell biology: 271 (rank: 50,361 (tie) )
    • immunology: 117,109 (rank: 60 )
    • infectious diseases: 527 (rank: 53,395 (tie) )
    • systems biology: 383 (rank: 14,915 (tie) )

Downloads per author, site-wide

Preprints

RNA-seq preprocessing and sample size considerations for gene network inference

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Immunological memory to SARS-CoV-2 assessed for up to eight months after infection

immunology more details view paper
  • Downloaded 73,308 times
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    • Site-wide: 124
    • In immunology: 4
  • Year to date:
    • Site-wide: 1,741
  • Since beginning of last month:
    • Site-wide: 2,261

Negligible impact of SARS-CoV-2 variants on CD4+ and CD8+ T cell reactivity in COVID-19 exposed donors and vaccinees.

immunology more details view paper
  • Downloaded 30,144 times
  • Download rankings, all-time:
    • Site-wide: 356
    • In immunology: 21
  • Year to date:
    • Site-wide: 4,837
  • Since beginning of last month:
    • Site-wide: 5,722

NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

bioinformatics more details view paper
  • Downloaded 5,615 times
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    • Site-wide: 2,999
    • In bioinformatics: 219
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 20,315

Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

immunology more details view paper
  • Downloaded 4,935 times
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    • Site-wide: 3,566
    • In immunology: 148
  • Year to date:
    • Site-wide: 18,360
  • Since beginning of last month:
    • Site-wide: 122,153

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

immunology more details view paper
  • Downloaded 3,143 times
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    • Site-wide: 6,857
    • In immunology: 273
  • Year to date:
    • Site-wide: 92,552
  • Since beginning of last month:
    • Site-wide: 102,528

NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

bioinformatics more details view paper
  • Downloaded 2,357 times
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    • Site-wide: 10,501
    • In bioinformatics: 1,114
  • Year to date:
    • Site-wide: 194,472
  • Since beginning of last month:
    • Site-wide: 94,310

MOGSA: integrative single sample gene-set analysis of multiple omics data

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  • Downloaded 2,140 times
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    • Site-wide: 12,151
    • In bioinformatics: 1,302
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
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Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

bioinformatics more details view paper
  • Downloaded 2,081 times
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    • Site-wide: 12,664
    • In bioinformatics: 1,401
  • Year to date:
    • Site-wide: 138,538
  • Since beginning of last month:
    • Site-wide: 7,590

No cell is an island: circulating T cell:monocyte complexes are markers of immune perturbations

immunology more details view paper
  • Downloaded 987 times
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    • Site-wide: 40,798
    • In immunology: 1,421
  • Year to date:
    • Site-wide: 166,672
  • Since beginning of last month:
    • Site-wide: 177,486

A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer

immunology more details view paper
  • Downloaded 967 times
  • Download rankings, all-time:
    • Site-wide: 42,102
    • In immunology: 1,461
  • Year to date:
    • Site-wide: 168,968
  • Since beginning of last month:
    • Site-wide: 147,966

Benchmarking predictions of MHC class I restricted T cell epitopes

immunology more details view paper
  • Downloaded 860 times
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    • Site-wide: 50,407
    • In immunology: 1,725
  • Year to date:
    • Site-wide: 105,995
  • Since beginning of last month:
    • Site-wide: 91,924

BepiPred-3.0: Improved B-cell epitope prediction using protein language models

bioinformatics more details view paper
  • Downloaded 827 times
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    • Site-wide: 53,473
    • In bioinformatics: 7,838
  • Year to date:
    • Site-wide: 49,412
  • Since beginning of last month:
    • Site-wide: 2,141

Footprints of antigen processing boost MHC class II natural ligand binding predictions

immunology more details view paper
  • Downloaded 821 times
  • Download rankings, all-time:
    • Site-wide: 54,091
    • In immunology: 1,829
  • Year to date:
    • Site-wide: 103,649
  • Since beginning of last month:
    • Site-wide: 144,653

The challenge of distinguishing cell-cell complexes from singlet cells in non-imaging flow cytometry and single-cell sorting

immunology more details view paper
  • Downloaded 675 times
  • Download rankings, all-time:
    • Site-wide: 71,906
    • In immunology: 2,359
  • Year to date:
    • Site-wide: 87,829
  • Since beginning of last month:
    • Site-wide: 212,172

DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

bioinformatics more details view paper
  • Downloaded 650 times
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    • Site-wide: 75,654
    • In bioinformatics: 7,007
  • Year to date:
    • Site-wide: 138,613
  • Since beginning of last month:
    • Site-wide: 116,765

TCRMatch: Predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors

immunology more details view paper
  • Downloaded 603 times
  • Download rankings, all-time:
    • Site-wide: 83,196
    • In immunology: 2,709
  • Year to date:
    • Site-wide: 92,602
  • Since beginning of last month:
    • Site-wide: 214,526

A curated collection of human vaccination response signatures

bioinformatics more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 87,951
    • In bioinformatics: 8,077
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 111,818

Gene Regulatory Cross Networks: Inferring Gene Level Cell-to-Cell Communications of Immune Cells

bioinformatics more details view paper
  • Downloaded 471 times
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    • Site-wide: 111,401
    • In bioinformatics: 9,369
  • Year to date:
    • Site-wide: 140,741
  • Since beginning of last month:
    • Site-wide: 202,355

Transcriptional analysis of peripheral memory T cells reveals Parkinson's disease-specific gene signatures

immunology more details view paper
  • Downloaded 422 times
  • Download rankings, all-time:
    • Site-wide: 124,032
    • In immunology: 3,963
  • Year to date:
    • Site-wide: 72,049
  • Since beginning of last month:
    • Site-wide: 110,047

A system-view of B. pertussis booster vaccine responses in adults primed with whole-cell vs. acellular vaccine in infancy

systems biology more details view paper
  • Downloaded 391 times
  • Download rankings, all-time:
    • Site-wide: 132,924
    • In systems biology: 2,710
  • Year to date:
    • Site-wide: 79,805
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    • Site-wide: 122,361

Combined assessment of MHC binding and antigen expression improves T cell epitope predictions

bioinformatics more details view paper
  • Downloaded 356 times
  • Download rankings, all-time:
    • Site-wide: 143,396
    • In bioinformatics: 11,395
  • Year to date:
    • Site-wide: 184,722
  • Since beginning of last month:
    • Site-wide: 99,638

Predictive performance and clinical application of COV50, a urinary proteomic biomarker in early COVID-19 infection: a cohort study

infectious diseases more details view paper
  • Downloaded 329 times
  • Download rankings, all-time:
    • Site-wide: 151,494
    • In infectious diseases: 6,954
  • Year to date:
    • Site-wide: 122,597
  • Since beginning of last month:
    • Site-wide: 135,321

Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: results from the IMPACC study

allergy and immunology more details view paper
  • Downloaded 323 times
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    • Site-wide: 153,248
    • In allergy and immunology: 303
  • Year to date:
    • Site-wide: 86,494
  • Since beginning of last month:
    • Site-wide: 63,231

Uncovering the cell type specificity of blood sample derived gene signatures using RNA expression data

bioinformatics more details view paper
  • Downloaded 321 times
  • Download rankings, all-time:
    • Site-wide: 153,975
    • In bioinformatics: 11,994
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 152,664

Transcriptomics of acute DENV-specific CD8+ T cells does not support qualitative differences as drivers of disease severity.

allergy and immunology more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 157,873
    • In allergy and immunology: 306
  • Year to date:
    • Site-wide: 73,128
  • Since beginning of last month:
    • Site-wide: 107,661

OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies

bioinformatics more details view paper
  • Downloaded 302 times
  • Download rankings, all-time:
    • Site-wide: 159,602
    • In bioinformatics: 12,321
  • Year to date:
    • Site-wide: 127,475
  • Since beginning of last month:
    • Site-wide: 167,508

Disruption of Mitochondrial Quality Control Genes Promotes Caspase-Resistant Cell Survival Following Apoptotic Stimuli

cell biology more details view paper
  • Downloaded 280 times
  • Download rankings, all-time:
    • Site-wide: 166,425
    • In cell biology: 7,819
  • Year to date:
    • Site-wide: 54,970
  • Since beginning of last month:
    • Site-wide: 139,916

Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA-DQ2.5

immunology more details view paper
  • Downloaded 269 times
  • Download rankings, all-time:
    • Site-wide: 169,691
    • In immunology: 5,349
  • Year to date:
    • Site-wide: 89,724
  • Since beginning of last month:
    • Site-wide: 212,082

CD4+CCR6+ T cells dominate the BCG-induced transcriptional signature

immunology more details view paper
  • Downloaded 229 times
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    • Site-wide: 180,704
    • In immunology: 5,794
  • Year to date:
    • Site-wide: 56,212
  • Since beginning of last month:
    • Site-wide: 171,974

Towards the prediction of non-peptidic epitopes

bioinformatics more details view paper
  • Downloaded 193 times
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    • Site-wide: 189,600
    • In bioinformatics: 14,035
  • Year to date:
    • Site-wide: 157,597
  • Since beginning of last month:
    • Site-wide: 166,908

Expression of specific HLA class II alleles is associated with an increased risk for active tuberculosis and a distinct gene expression profile

infectious diseases more details view paper
  • Downloaded 159 times
  • Download rankings, all-time:
    • Site-wide: 196,828
    • In infectious diseases: 8,210
  • Year to date:
    • Site-wide: 147,774
  • Since beginning of last month:
    • Site-wide: 173,986

Machine learning reveals limited contribution of trans-only encoded variants to the HLA-DQ immunopeptidome by accurate and comprehensive HLA-DQ antigen presentation prediction

bioinformatics more details view paper
  • Downloaded 136 times
  • Download rankings, all-time:
    • Site-wide: 201,220
    • In bioinformatics: 14,762
  • Year to date:
    • Site-wide: 49,732
  • Since beginning of last month:
    • Site-wide: 31,832

High-resolution African HLA resource uncovers HLA-DRB1 expression effects underlying vaccine response

infectious diseases more details view paper
  • Downloaded 76 times
  • Download rankings, all-time:
    • Site-wide: 212,350
    • In infectious diseases: 8,668
  • Year to date:
    • Site-wide: 15,771
  • Since beginning of last month:
    • Site-wide: 10,523

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