Author: Gad A. Getz

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Preprints

Analysis of protein-coding genetic variation in 60,706 humans

• Downloaded 21,936 times
• Download rankings, all-time:
  • Site-wide: 291
  • In genomics: 11
• Year to date:
  • Site-wide: 49,014
• Since beginning of last month:
  • Site-wide: None

The Repertoire of Mutational Signatures in Human Cancer

• Downloaded 18,767 times
• Download rankings, all-time:
  • Site-wide: 346
  • In cancer biology: 2
• Year to date:
  • Site-wide: 1,852
• Since beginning of last month:
  • Site-wide: 1,737

The evolutionary history of 2,658 cancers

• Downloaded 9,450 times
• Download rankings, all-time:
  • Site-wide: 802
  • In cancer biology: 8
• Year to date:
  • Site-wide: 22,976
• Since beginning of last month:
  • Site-wide: 14,704

The GTEx Consortium atlas of genetic regulatory effects across human tissues

• Downloaded 8,122 times
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  • Site-wide: 979
  • In genetics: 29
• Year to date:
  • Site-wide: 3,111
• Since beginning of last month:
  • Site-wide: 2,787

The whole-genome panorama of cancer drivers

• Downloaded 6,568 times
• Download rankings, all-time:
  • Site-wide: 1,268
  • In cancer biology: 12
• Year to date:
  • Site-wide: 9,464
• Since beginning of last month:
  • Site-wide: 7,726

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

• Downloaded 6,447 times
• Download rankings, all-time:
  • Site-wide: 1,303
  • In bioinformatics: 90
• Year to date:
  • Site-wide: 18,587
• Since beginning of last month:
  • Site-wide: 15,710

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

• Downloaded 5,632 times
• Download rankings, all-time:
  • Site-wide: 1,596
  • In cancer biology: 21
• Year to date:
  • Site-wide: 3,611
• Since beginning of last month:
  • Site-wide: 3,020

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

• Downloaded 5,417 times
• Download rankings, all-time:
  • Site-wide: 1,670
  • In genomics: 164
• Year to date:
  • Site-wide: 15,252
• Since beginning of last month:
  • Site-wide: 15,764

Calling Somatic SNVs and Indels with Mutect2

• Downloaded 4,683 times
• Download rankings, all-time:
  • Site-wide: 2,040
  • In bioinformatics: 182
• Year to date:
  • Site-wide: 1,134
• Since beginning of last month:
  • Site-wide: 1,989

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

• Downloaded 3,467 times
• Download rankings, all-time:
  • Site-wide: 3,151
  • In cancer biology: 49
• Year to date:
  • Site-wide: 2,036
• Since beginning of last month:
  • Site-wide: 1,537

Tumor mutational landscape is a record of the pre-malignant state

• Downloaded 3,455 times
• Download rankings, all-time:
  • Site-wide: 3,163
  • In genomics: 364
• Year to date:
  • Site-wide: 22,143
• Since beginning of last month:
  • Site-wide: None

Scaling computational genomics to millions of individuals with GPUs

• Downloaded 3,293 times
• Download rankings, all-time:
  • Site-wide: 3,384
  • In genomics: 388
• Year to date:
  • Site-wide: 37,158
• Since beginning of last month:
  • Site-wide: 37,291

A comprehensive analysis of RNA sequences reveals macroscopic somatic clonal expansion across normal tissues

• Downloaded 3,288 times
• Download rankings, all-time:
  • Site-wide: 3,396
  • In genomics: 389
• Year to date:
  • Site-wide: 34,030
• Since beginning of last month:
  • Site-wide: 31,443

A deep learning system can accurately classify primary and metastatic cancers based on patterns of passenger mutations

• Downloaded 3,170 times
• Download rankings, all-time:
  • Site-wide: 3,588
  • In cancer biology: 55
• Year to date:
  • Site-wide: 49,561
• Since beginning of last month:
  • Site-wide: 45,028

WRN Helicase is a Synthetic Lethal Target in Microsatellite Unstable Cancers

• Downloaded 2,781 times
• Download rankings, all-time:
  • Site-wide: 4,283
  • In cancer biology: 62
• Year to date:
  • Site-wide: 34,267
• Since beginning of last month:
  • Site-wide: None

Comprehensive analysis of tumour initiation, spatial and temporal progression under multiple lines of treatment

• Downloaded 2,677 times
• Download rankings, all-time:
  • Site-wide: 4,549
  • In bioinformatics: 500
• Year to date:
  • Site-wide: 6,119
• Since beginning of last month:
  • Site-wide: 14,787

Cell type specific genetic regulation of gene expression across human tissues

• Downloaded 2,473 times
• Download rankings, all-time:
  • Site-wide: 5,114
  • In genomics: 601
• Year to date:
  • Site-wide: 12,886
• Since beginning of last month:
  • Site-wide: 10,037

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

• Downloaded 2,307 times
• Download rankings, all-time:
  • Site-wide: 5,674
  • In genomics: 662
• Year to date:
  • Site-wide: 27,585
• Since beginning of last month:
  • Site-wide: 37,402

A comparative analysis of network mutation burdens across 21 tumor types augments discovery from cancer genomes

• Downloaded 2,120 times
• Download rankings, all-time:
  • Site-wide: 6,397
  • In cancer biology: 96
• Year to date:
  • Site-wide: 88,460
• Since beginning of last month:
  • Site-wide: 82,732

Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences

• Downloaded 2,089 times
• Download rankings, all-time:
  • Site-wide: 6,514
  • In genomics: 739
• Year to date:
  • Site-wide: 22,854
• Since beginning of last month:
  • Site-wide: 53,336

Clustering of Type 2 Diabetes Genetic Loci by Multi-Trait Associations Identifies Disease Mechanisms and Subtypes

• Downloaded 1,989 times
• Download rankings, all-time:
  • Site-wide: 6,991
  • In genetics: 342
• Year to date:
  • Site-wide: 52,299
• Since beginning of last month:
  • Site-wide: None

Passenger Hotspot Mutations in Cancer

• Downloaded 1,878 times
• Download rankings, all-time:
  • Site-wide: 7,643
  • In genomics: 850
• Year to date:
  • Site-wide: 52,218
• Since beginning of last month:
  • Site-wide: 51,909

Pathway and network analysis of more than 2,500 whole cancer genomes

• Downloaded 1,563 times
• Download rankings, all-time:
  • Site-wide: 10,087
  • In cancer biology: 198
• Year to date:
  • Site-wide: 77,575
• Since beginning of last month:
  • Site-wide: 53,167

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

• Downloaded 1,067 times
• Download rankings, all-time:
  • Site-wide: 17,847
  • In genomics: 1,847
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: None

Expanding discovery from cancer genomes by integrating protein network analyses with in vivo tumorigenesis assays

• Downloaded 933 times
• Download rankings, all-time:
  • Site-wide: 21,716
  • In cancer biology: 528
• Year to date:
  • Site-wide: 102,422
• Since beginning of last month:
  • Site-wide: 68,480

The Tangent copy-number inference pipeline for cancer genome analyses

• Downloaded 857 times
• Download rankings, all-time:
  • Site-wide: 24,563
  • In bioinformatics: 2,928
• Year to date:
  • Site-wide: 50,044
• Since beginning of last month:
  • Site-wide: 50,276

Detecting cancer vulnerabilities through gene networks under purifying selection in 4,700 cancer genomes

• Downloaded 730 times
• Download rankings, all-time:
  • Site-wide: 30,675
  • In bioinformatics: 3,494
• Year to date:
  • Site-wide: 72,324
• Since beginning of last month:
  • Site-wide: 64,695

Case-control analysis identifies shared properties of rare germline variation in cancer predisposing genes

• Downloaded 690 times
• Download rankings, all-time:
  • Site-wide: 33,138
  • In genetics: 1,635
• Year to date:
  • Site-wide: 98,665
• Since beginning of last month:
  • Site-wide: 80,622

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to graft-versus-leukemia

• Downloaded 409 times
• Download rankings, all-time:
  • Site-wide: 61,669
  • In cancer biology: 1,750
• Year to date:
  • Site-wide: 41,519
• Since beginning of last month:
  • Site-wide: 33,634