Author: Gad A. Getz

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Preprints

Analysis of protein-coding genetic variation in 60,706 humans

• Downloaded 22,050 times
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  • Site-wide: 310
  • In genomics: 11
• Year to date:
  • Site-wide: 22,530
• Since beginning of last month:
  • Site-wide: 15,857

The Repertoire of Mutational Signatures in Human Cancer

• Downloaded 19,137 times
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  • Site-wide: 362
  • In cancer biology: 2
• Year to date:
  • Site-wide: 2,205
• Since beginning of last month:
  • Site-wide: 2,764

The evolutionary history of 2,658 cancers

• Downloaded 9,500 times
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  • Site-wide: 879
  • In cancer biology: 8
• Year to date:
  • Site-wide: 30,966
• Since beginning of last month:
  • Site-wide: 25,508

The GTEx Consortium atlas of genetic regulatory effects across human tissues

• Downloaded 8,314 times
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  • Site-wide: 1,050
  • In genetics: 29
• Year to date:
  • Site-wide: 4,463
• Since beginning of last month:
  • Site-wide: 7,203

The whole-genome panorama of cancer drivers

• Downloaded 6,673 times
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  • Site-wide: 1,374
  • In cancer biology: 13
• Year to date:
  • Site-wide: 12,454
• Since beginning of last month:
  • Site-wide: 14,621

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

• Downloaded 6,541 times
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  • Site-wide: 1,411
  • In bioinformatics: 93
• Year to date:
  • Site-wide: 18,968
• Since beginning of last month:
  • Site-wide: 13,450

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

• Downloaded 6,024 times
• Download rankings, all-time:
  • Site-wide: 1,580
  • In cancer biology: 19
• Year to date:
  • Site-wide: 2,799
• Since beginning of last month:
  • Site-wide: 2,108

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

• Downloaded 5,496 times
• Download rankings, all-time:
  • Site-wide: 1,806
  • In genomics: 169
• Year to date:
  • Site-wide: 19,416
• Since beginning of last month:
  • Site-wide: 20,727

Calling Somatic SNVs and Indels with Mutect2

• Downloaded 5,355 times
• Download rankings, all-time:
  • Site-wide: 1,870
  • In bioinformatics: 150
• Year to date:
  • Site-wide: 1,112
• Since beginning of last month:
  • Site-wide: 2,645

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

• Downloaded 3,869 times
• Download rankings, all-time:
  • Site-wide: 2,962
  • In cancer biology: 43
• Year to date:
  • Site-wide: 2,165
• Since beginning of last month:
  • Site-wide: 2,488

Tumor mutational landscape is a record of the pre-malignant state

• Downloaded 3,562 times
• Download rankings, all-time:
  • Site-wide: 3,350
  • In genomics: 373
• Year to date:
  • Site-wide: 18,505
• Since beginning of last month:
  • Site-wide: 12,070

A comprehensive analysis of RNA sequences reveals macroscopic somatic clonal expansion across normal tissues

• Downloaded 3,343 times
• Download rankings, all-time:
  • Site-wide: 3,655
  • In genomics: 406
• Year to date:
  • Site-wide: 35,203
• Since beginning of last month:
  • Site-wide: 30,962

Scaling computational genomics to millions of individuals with GPUs

• Downloaded 3,309 times
• Download rankings, all-time:
  • Site-wide: 3,709
  • In genomics: 412
• Year to date:
  • Site-wide: 62,083
• Since beginning of last month:
  • Site-wide: 82,382

A deep learning system can accurately classify primary and metastatic cancers based on patterns of passenger mutations

• Downloaded 3,211 times
• Download rankings, all-time:
  • Site-wide: 3,870
  • In cancer biology: 55
• Year to date:
  • Site-wide: 47,724
• Since beginning of last month:
  • Site-wide: 24,404

Comprehensive analysis of tumour initiation, spatial and temporal progression under multiple lines of treatment

• Downloaded 2,882 times
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  • Site-wide: 4,499
  • In bioinformatics: 464
• Year to date:
  • Site-wide: 6,095
• Since beginning of last month:
  • Site-wide: 11,616

WRN Helicase is a Synthetic Lethal Target in Microsatellite Unstable Cancers

• Downloaded 2,852 times
• Download rankings, all-time:
  • Site-wide: 4,555
  • In cancer biology: 63
• Year to date:
  • Site-wide: 30,053
• Since beginning of last month:
  • Site-wide: 32,935

Cell type specific genetic regulation of gene expression across human tissues

• Downloaded 2,555 times
• Download rankings, all-time:
  • Site-wide: 5,346
  • In genomics: 590
• Year to date:
  • Site-wide: 17,136
• Since beginning of last month:
  • Site-wide: 17,091

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

• Downloaded 2,361 times
• Download rankings, all-time:
  • Site-wide: 6,062
  • In genomics: 678
• Year to date:
  • Site-wide: 32,475
• Since beginning of last month:
  • Site-wide: 28,663

A comparative analysis of network mutation burdens across 21 tumor types augments discovery from cancer genomes

• Downloaded 2,126 times
• Download rankings, all-time:
  • Site-wide: 7,045
  • In cancer biology: 108
• Year to date:
  • Site-wide: 117,739
• Since beginning of last month:
  • Site-wide: 126,670

Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences

• Downloaded 2,119 times
• Download rankings, all-time:
  • Site-wide: 7,068
  • In genomics: 771
• Year to date:
  • Site-wide: 38,304
• Since beginning of last month:
  • Site-wide: 42,125

Clustering of Type 2 Diabetes Genetic Loci by Multi-Trait Associations Identifies Disease Mechanisms and Subtypes

• Downloaded 2,036 times
• Download rankings, all-time:
  • Site-wide: 7,481
  • In genetics: 347
• Year to date:
  • Site-wide: 45,798
• Since beginning of last month:
  • Site-wide: 33,473

Passenger Hotspot Mutations in Cancer

• Downloaded 1,912 times
• Download rankings, all-time:
  • Site-wide: 8,216
  • In genomics: 884
• Year to date:
  • Site-wide: 54,163
• Since beginning of last month:
  • Site-wide: 42,040

Pathway and network analysis of more than 2,500 whole cancer genomes

• Downloaded 1,571 times
• Download rankings, all-time:
  • Site-wide: 11,025
  • In cancer biology: 217
• Year to date:
  • Site-wide: 105,191
• Since beginning of last month:
  • Site-wide: 116,257

Framework For Quality Assessment Of Whole Genome, Cancer Sequences

• Downloaded 1,082 times
• Download rankings, all-time:
  • Site-wide: 19,242
  • In genomics: 1,924
• Year to date:
  • Site-wide: 124,676
• Since beginning of last month:
  • Site-wide: 97,745

Expanding discovery from cancer genomes by integrating protein network analyses with in vivo tumorigenesis assays

• Downloaded 934 times
• Download rankings, all-time:
  • Site-wide: 23,866
  • In cancer biology: 594
• Year to date:
  • Site-wide: 134,465
• Since beginning of last month:
  • Site-wide: 133,028

The Tangent copy-number inference pipeline for cancer genome analyses

• Downloaded 921 times
• Download rankings, all-time:
  • Site-wide: 24,376
  • In bioinformatics: 2,849
• Year to date:
  • Site-wide: 37,023
• Since beginning of last month:
  • Site-wide: 19,004

Detecting cancer vulnerabilities through gene networks under purifying selection in 4,700 cancer genomes

• Downloaded 745 times
• Download rankings, all-time:
  • Site-wide: 32,739
  • In bioinformatics: 3,664
• Year to date:
  • Site-wide: 87,261
• Since beginning of last month:
  • Site-wide: 109,690

Case-control analysis identifies shared properties of rare germline variation in cancer predisposing genes

• Downloaded 695 times
• Download rankings, all-time:
  • Site-wide: 36,029
  • In genetics: 1,708
• Year to date:
  • Site-wide: 125,063
• Since beginning of last month:
  • Site-wide: 119,873

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to graft-versus-leukemia

• Downloaded 430 times
• Download rankings, all-time:
  • Site-wide: 63,725
  • In cancer biology: 1,818
• Year to date:
  • Site-wide: 59,903
• Since beginning of last month:
  • Site-wide: 59,087