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Author: Hannah W Carter

Rankings

  • All-time downloads: 16,977 (rank: 17,370 )
  • Categories:
    • bioengineering: 198 (rank: 18,722 (tie) )
    • bioinformatics: 5,769 (rank: 2,609 )
    • cancer biology: 4,583 (rank: 1,162 )
    • endocrinology: 121 (rank: 2,284 (tie) )
    • epidemiology: 746 (rank: 16,780 (tie) )
    • genomics: 3,169 (rank: 9,206 )
    • immunology: 517 (rank: 26,064 (tie) )
    • oncology: 305 (rank: 4,799 (tie) )

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Preprints

Rab11-FIP1C is dispensable for HIV-1 replication in primary CD4+ T cells but its role is cell-type-dependent in immortalized human T-cell lines

microbiology more details view paper

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Bento: A toolkit for subcellular analysis of spatial transcriptomics data

bioinformatics more details view paper

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Increasing metadata coverage of SRA BioSample entries using deep learning based Named Entity Recognition

bioinformatics more details view paper
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    • Site-wide: 7,680
    • In bioinformatics: 732
  • Year to date:
    • Site-wide: 59,997
  • Since beginning of last month:
    • Site-wide: 67,188

Pan-Cancer Analysis Reveals Technical Artifacts in The Cancer Genome Atlas (TCGA) Germline Variant Calls

genomics more details view paper
  • Downloaded 2,021 times
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    • Site-wide: 11,709
    • In genomics: 1,036
  • Year to date:
    • Site-wide: 171,578
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Germline and somatic genetic variants in the p53 pathway interact to affect cancer risk, progression and drug response

cancer biology more details view paper
  • Downloaded 1,247 times
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    • Site-wide: 24,421
    • In cancer biology: 615
  • Year to date:
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Immune DNA signature of T-cell infiltration in breast tumor exomes

genomics more details view paper
  • Downloaded 1,182 times
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    • Site-wide: 26,462
    • In genomics: 2,194
  • Year to date:
    • Site-wide: 159,903
  • Since beginning of last month:
    • Site-wide: 139,097

GPCRs show widespread differential mRNA expression and frequent mutation and copy number variation in solid tumors

bioinformatics more details view paper
  • Downloaded 1,148 times
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    • Site-wide: 27,724
    • In bioinformatics: 2,857
  • Year to date:
    • Site-wide: 115,535
  • Since beginning of last month:
    • Site-wide: 156,409

Germline variants that influence the tumor immune microenvironment also drive response to immunotherapy

cancer biology more details view paper
  • Downloaded 954 times
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    • Site-wide: 36,538
    • In cancer biology: 1,324
  • Year to date:
    • Site-wide: 13,375
  • Since beginning of last month:
    • Site-wide: 4,713

The landscape of extrachromosomal circular DNA in medulloblastoma

cancer biology more details view paper
  • Downloaded 951 times
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    • Site-wide: 36,735
    • In cancer biology: 1,280
  • Year to date:
    • Site-wide: 8,468
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Extracting allelic read counts from 250,000 human sequencing runs in Sequence Read Archive

bioinformatics more details view paper
  • Downloaded 897 times
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    • Site-wide: 40,038
    • In bioinformatics: 4,001
  • Year to date:
    • Site-wide: 135,732
  • Since beginning of last month:
    • Site-wide: 140,544

Target deconvolution using in vitro evolution in haploid human cells

cancer biology more details view paper
  • Downloaded 883 times
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    • Site-wide: 41,001
    • In cancer biology: 1,180
  • Year to date:
    • Site-wide: 22,103
  • Since beginning of last month:
    • Site-wide: 36,495

The effectiveness and cost effectiveness of a hospital avoidance program in a residential aged care facility

epidemiology more details view paper
  • Downloaded 773 times
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    • Site-wide: 49,909
    • In epidemiology: 2,398
  • Year to date:
    • Site-wide: 111,784
  • Since beginning of last month:
    • Site-wide: 137,322

Reconstructing and characterizing focal amplifications in cancer using AmpliconArchitect

bioinformatics more details view paper
  • Downloaded 681 times
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    • Site-wide: 59,693
    • In bioinformatics: 5,467
  • Year to date:
    • Site-wide: 150,333
  • Since beginning of last month:
    • Site-wide: 142,408

IRE1? regulates macrophage polarization, PD-L1 expression and tumor survival

cancer biology more details view paper
  • Downloaded 646 times
  • Download rankings, all-time:
    • Site-wide: 64,119
    • In cancer biology: 1,728
  • Year to date:
    • Site-wide: 142,624
  • Since beginning of last month:
    • Site-wide: 107,539

MHC-II constrains the natural neutralizing antibody response to the SARS-CoV-2 spike RBM in humans

immunology more details view paper
  • Downloaded 564 times
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    • Site-wide: 76,203
    • In immunology: 2,373
  • Year to date:
    • Site-wide: 72,611
  • Since beginning of last month:
    • Site-wide: 74,231

Evaluating a polygenic hazard score to predict risk of developing metastatic or fatal prostate cancer in the multi-ancestry Million Veteran Program cohort

oncology more details view paper
  • Downloaded 485 times
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    • Site-wide: 90,981
    • In oncology: 353
  • Year to date:
    • Site-wide: 11,240
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    • Site-wide: 25,284

The unfolded protein response links tumor aneuploidy to local immune dysregulation

cancer biology more details view paper
  • Downloaded 333 times
  • Download rankings, all-time:
    • Site-wide: 128,701
    • In cancer biology: 3,693
  • Year to date:
    • Site-wide: 142,416
  • Since beginning of last month:
    • Site-wide: 94,675

Predicting functional consequences of mutations using molecular interaction network features

bioinformatics more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 136,352
    • In bioinformatics: 10,447
  • Year to date:
    • Site-wide: 106,903
  • Since beginning of last month:
    • Site-wide: 80,062

Autoimmune Alleles at the Major Histocompatibility Locus Modify Melanoma Susceptibility

cancer biology more details view paper
  • Downloaded 281 times
  • Download rankings, all-time:
    • Site-wide: 144,367
    • In cancer biology: 4,655
  • Year to date:
    • Site-wide: 55,134
  • Since beginning of last month:
    • Site-wide: 27,087

Immunogenic potential of neopeptides depends on parent protein subcellular location

bioinformatics more details view paper
  • Downloaded 278 times
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    • Site-wide: 145,339
    • In bioinformatics: 11,673
  • Year to date:
    • Site-wide: 32,847
  • Since beginning of last month:
    • Site-wide: 87,380

Discovery of Novel Trans-Ancestry and Ancestry-Specific Gene Loci for Total Testosterone in a Multi-Ancestral Analysis of Men in the Million Veteran Program

endocrinology more details view paper
  • Downloaded 225 times
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    • Site-wide: 160,668
    • In endocrinology: 260
  • Year to date:
    • Site-wide: 16,960
  • Since beginning of last month:
    • Site-wide: 27,269

Effect of Substrate Stiffness on Human Intestinal Enteroids Infectivity by Enteroaggregative Escherichia coli

bioengineering more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 162,548
    • In bioengineering: 3,185
  • Year to date:
    • Site-wide: 140,950
  • Since beginning of last month:
    • Site-wide: 105,377

Accurate genome-wide germline profiling from decade-old archival tissue DNA reveals the contribution of common variants to precancer disease outcome

oncology more details view paper
  • Downloaded 126 times
  • Download rankings, all-time:
    • Site-wide: 182,405
    • In oncology: None
  • Year to date:
    • Site-wide: 36,984
  • Since beginning of last month:
    • Site-wide: 42,638

PRState: Incorporating Genetic Ancestry in Prostate Cancer Risk scores for African American Men

oncology more details view paper
  • Downloaded 92 times
  • Download rankings, all-time:
    • Site-wide: 187,037
    • In oncology: None
  • Year to date:
    • Site-wide: 52,286
  • Since beginning of last month:
    • Site-wide: 81,643

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