Author: Anuj Srivastava

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Preprints

Bioinformatics workflows for genomic analysis of tumors from Patient Derived Xenografts (PDX): challenges and guidelines

• Downloaded 1,644 times
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  • Site-wide: 18,222
  • In bioinformatics: 1,976
• Year to date:
  • Site-wide: 87,584
• Since beginning of last month:
  • Site-wide: 145,781

The genome of C57BL/6J "Eve", the mother of the laboratory mouse genome reference strain

• Downloaded 1,172 times
• Download rankings, all-time:
  • Site-wide: 31,214
  • In genomics: 2,589
• Year to date:
  • Site-wide: 148,419
• Since beginning of last month:
  • Site-wide: 91,171

Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts

• Downloaded 1,054 times
• Download rankings, all-time:
  • Site-wide: 36,745
  • In cancer biology: 995
• Year to date:
  • Site-wide: 116,760
• Since beginning of last month:
  • Site-wide: 164,396

Transmission dynamics and forecasts of the COVID-19 pandemic in Mexico, March 20-November 11, 2020.

• Downloaded 970 times
• Download rankings, all-time:
  • Site-wide: 41,801
  • In epidemiology: 2,200
• Year to date:
  • Site-wide: 29,784
• Since beginning of last month:
  • Site-wide: 61,639

Understanding Spatial Heterogeneity of COVID-19 Pandemic Using Shape Analysis of Growth Rate Curves

• Downloaded 962 times
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  • Site-wide: 42,304
  • In epidemiology: 2,228
• Year to date:
  • Site-wide: 124,426
• Since beginning of last month:
  • Site-wide: 38,331

Bayesian Estimation of 3D Chromosomal Structure from Single Cell Hi-C Data

• Downloaded 877 times
• Download rankings, all-time:
  • Site-wide: 48,865
  • In bioinformatics: 4,904
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 196,539

Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation.

• Downloaded 769 times
• Download rankings, all-time:
  • Site-wide: 59,450
  • In genomics: 4,157
• Year to date:
  • Site-wide: 153,090
• Since beginning of last month:
  • Site-wide: 60,469

PDXNet Portal: Patient-Derived Xenograft model, data, workflow, and tool discovery

• Downloaded 678 times
• Download rankings, all-time:
  • Site-wide: 71,212
  • In cancer biology: 2,173
• Year to date:
  • Site-wide: 12,361
• Since beginning of last month:
  • Site-wide: 29,232

Systematic Establishment of Robustness and Standards in Patient-Derived Xenograft Experiments and Analysis

• Downloaded 591 times
• Download rankings, all-time:
  • Site-wide: 85,311
  • In cancer biology: 2,528
• Year to date:
  • Site-wide: 116,452
• Since beginning of last month:
  • Site-wide: 128,925

Random-walk, agent-level pandemic simulation (RAW-ALPS) for analyzing effects of different lockdown measures

• Downloaded 521 times
• Download rankings, all-time:
  • Site-wide: 99,319
  • In epidemiology: 4,253
• Year to date:
  • Site-wide: 173,490
• Since beginning of last month:
  • Site-wide: 185,328

A Genomically and Clinically Annotated Patient Derived Xenograft (PDX) Resource for Preclinical Research in Non-Small Cell Lung Cancer

• Downloaded 438 times
• Download rankings, all-time:
  • Site-wide: 119,357
  • In cancer biology: 3,956
• Year to date:
  • Site-wide: 7,413
• Since beginning of last month:
  • Site-wide: 19,319

Identification of slow-cycling germline stem cells and their regulation by PLZF

• Downloaded 411 times
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  • Site-wide: 126,849
  • In developmental biology: 3,360
• Year to date:
  • Site-wide: 82,798
• Since beginning of last month:
  • Site-wide: 143,353

Towards A 3D Chromosome Shape Alphabet

• Downloaded 397 times
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  • Site-wide: 130,931
  • In bioinformatics: 10,560
• Year to date:
  • Site-wide: 169,243
• Since beginning of last month:
  • Site-wide: 131,374

An investigation of spatial-temporal patterns and predictions of the COVID-19 pandemic in Colombia, 2020-2021

• Downloaded 290 times
• Download rankings, all-time:
  • Site-wide: 162,962
  • In epidemiology: 6,622
• Year to date:
  • Site-wide: 76,822
• Since beginning of last month:
  • Site-wide: 99,560

Development and application of genetic ancestry reconstruction methods to study diversity of patient-derived models in the NCI PDXNet Consortium

• Downloaded 110 times
• Download rankings, all-time:
  • Site-wide: 205,635
  • In cancer biology: 6,403
• Year to date:
  • Site-wide: 89,448
• Since beginning of last month:
  • Site-wide: 49,162

PROTEIN CODING VARIATION IN OUTBRED LABORATORY MOUSE STOCKS PROVIDES A MOLECULAR BASIS FOR DISTINCT RESEARCH APPLICATIONS

• Downloaded 95 times
• Download rankings, all-time:
  • Site-wide: 208,375
  • In genetics: 7,176
• Year to date:
  • Site-wide: 192,049
• Since beginning of last month:
  • Site-wide: 139,794

ACDA: Implementation of an Augmented Drug Synergy Prediction Algorithm

• Downloaded 94 times
• Download rankings, all-time:
  • Site-wide: 208,566
  • In bioinformatics: 15,053
• Year to date:
  • Site-wide: 72,992
• Since beginning of last month:
  • Site-wide: 47,620