Author: Eric W. Deutsch

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Preprints

Reproducible big data science: A case study in continuous FAIRness

• Downloaded 1,957 times
• Download rankings, all-time:
  • Site-wide: 10,317
  • In bioinformatics: 1,169
• Year to date:
  • Site-wide: 93,049
• Since beginning of last month:
  • Site-wide: 83,965

Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data

• Downloaded 1,427 times
• Download rankings, all-time:
  • Site-wide: 16,721
  • In molecular biology: 457
• Year to date:
  • Site-wide: 30,743
• Since beginning of last month:
  • Site-wide: 109,064

Fast and simple comparison of semi-structured data, with emphasis on electronic health records

• Downloaded 1,379 times
• Download rankings, all-time:
  • Site-wide: 17,596
  • In bioinformatics: 1,994
• Year to date:
  • Site-wide: 41,380
• Since beginning of last month:
  • Site-wide: 75,811

Omics Discovery Index - Discovering and Linking Public Omics Datasets

• Downloaded 1,088 times
• Download rankings, all-time:
  • Site-wide: 25,175
  • In bioinformatics: 2,821
• Year to date:
  • Site-wide: 128,619
• Since beginning of last month:
  • Site-wide: 113,412

A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: a useful proteomic resource for a versatile pathogen.

• Downloaded 781 times
• Download rankings, all-time:
  • Site-wide: 40,906
  • In microbiology: 2,456
• Year to date:
  • Site-wide: 17,562
• Since beginning of last month:
  • Site-wide: 57,393

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

• Downloaded 747 times
• Download rankings, all-time:
  • Site-wide: 43,671
  • In bioinformatics: 4,573
• Year to date:
  • Site-wide: 77,858
• Since beginning of last month:
  • Site-wide: 92,790

PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline

• Downloaded 726 times
• Download rankings, all-time:
  • Site-wide: 45,435
  • In bioinformatics: 4,734
• Year to date:
  • Site-wide: 52,739
• Since beginning of last month:
  • Site-wide: 65,331

Proteomics Standards Initiative Extended FASTA Format (PEFF)

• Downloaded 656 times
• Download rankings, all-time:
  • Site-wide: 52,255
  • In bioinformatics: 5,230
• Year to date:
  • Site-wide: 84,730
• Since beginning of last month:
  • Site-wide: 71,837

mzMLb: a future-proof raw mass spectrometry data format based on standards-compliant mzML and optimized for speed and storage requirements

• Downloaded 641 times
• Download rankings, all-time:
  • Site-wide: 53,943
  • In bioinformatics: 5,381
• Year to date:
  • Site-wide: 58,424
• Since beginning of last month:
  • Site-wide: 49,808

Universal Spectrum Identifier for mass spectra

• Downloaded 527 times
• Download rankings, all-time:
  • Site-wide: 68,793
  • In bioinformatics: 6,540
• Year to date:
  • Site-wide: 24,260
• Since beginning of last month:
  • Site-wide: 47,324

A proteomics sample metadata representation for multiomics integration, and big data analysis.

• Downloaded 509 times
• Download rankings, all-time:
  • Site-wide: 71,630
  • In bioinformatics: 6,731
• Year to date:
  • Site-wide: 15,550
• Since beginning of last month:
  • Site-wide: 15,274

The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.

• Downloaded 486 times
• Download rankings, all-time:
  • Site-wide: 75,552
  • In bioinformatics: 6,983
• Year to date:
  • Site-wide: 153,139
• Since beginning of last month:
  • Site-wide: 140,288

The Arabidopsis thaliana PeptideAtlas; harnessing world-wide proteomics data for a comprehensive community proteomics resource

• Downloaded 436 times
• Download rankings, all-time:
  • Site-wide: 84,941
  • In plant biology: 2,206
• Year to date:
  • Site-wide: 19,798
• Since beginning of last month:
  • Site-wide: 47,530

Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation

• Downloaded 425 times
• Download rankings, all-time:
  • Site-wide: 87,074
  • In bioinformatics: 7,770
• Year to date:
  • Site-wide: 20,588
• Since beginning of last month:
  • Site-wide: 24,952

Universal Spectrum Explorer: A standalone (web-)application for cross-resource spectrum comparison

• Downloaded 422 times
• Download rankings, all-time:
  • Site-wide: 87,860
  • In bioinformatics: 7,798
• Year to date:
  • Site-wide: 37,374
• Since beginning of last month:
  • Site-wide: 69,714

BDQC: a general-purpose analytics tool for domain-blind validation of Big Data

• Downloaded 420 times
• Download rankings, all-time:
  • Site-wide: 88,126
  • In bioinformatics: 7,824
• Year to date:
  • Site-wide: 145,670
• Since beginning of last month:
  • Site-wide: 125,436

RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine

• Downloaded 165 times
• Download rankings, all-time:
  • Site-wide: 150,212
  • In bioinformatics: 11,453
• Year to date:
  • Site-wide: 72,885
• Since beginning of last month:
  • Site-wide: 7,587

A method for independent estimation of false localisation rate for phosphoproteomics

• Downloaded 148 times
• Download rankings, all-time:
  • Site-wide: 153,492
  • In bioinformatics: 11,639
• Year to date:
  • Site-wide: 81,474
• Since beginning of last month:
  • Site-wide: 9,132