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Author: Wolf Reik

Rankings

  • All-time downloads: 67,056 (rank: 1,953 )
  • Categories:
    • bioinformatics: 12,967 (rank: 458 )
    • cell biology: 12,553 (rank: 188 (tie) )
    • developmental biology: 20,772 (rank: 21 )
    • genomics: 15,777 (rank: 847 )
    • molecular biology: 4,987 (rank: 538 )

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Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 12,553 times
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    • Site-wide: 542
    • In cell biology: 4
  • Year to date:
    • Site-wide: 18,457
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    • Site-wide: 18,457

Accurate prediction of single-cell DNA methylation states using deep learning

bioinformatics more details view paper
  • Downloaded 6,291 times
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    • Site-wide: 1,342
    • In bioinformatics: 93
  • Year to date:
    • Site-wide: 43,868
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    • Site-wide: 43,868

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

developmental biology more details view paper
  • Downloaded 6,152 times
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    • Site-wide: 1,384
    • In developmental biology: 7
  • Year to date:
    • Site-wide: 20,427
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    • Site-wide: 20,427

SC3 - consensus clustering of single-cell RNA-Seq data

bioinformatics more details view paper
  • Downloaded 5,294 times
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    • Site-wide: 1,717
    • In bioinformatics: 138
  • Year to date:
    • Site-wide: 23,919
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    • Site-wide: 23,919

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

genomics more details view paper
  • Downloaded 4,868 times
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    • Site-wide: 1,919
    • In genomics: 203
  • Year to date:
    • Site-wide: 34,530
  • Since beginning of last month:
    • Site-wide: 34,530

Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

genomics more details view paper
  • Downloaded 2,968 times
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    • Site-wide: 3,892
    • In genomics: 456
  • Year to date:
    • Site-wide: 27,259
  • Since beginning of last month:
    • Site-wide: 27,259

Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis

developmental biology more details view paper
  • Downloaded 2,914 times
  • Download rankings, all-time:
    • Site-wide: 3,984
    • In developmental biology: 39
  • Year to date:
    • Site-wide: 1,569
  • Since beginning of last month:
    • Site-wide: 1,569

A single-cell transcriptomics CRISPR-activation screen identifies new epigenetic regulators of zygotic genome activation

developmental biology more details view paper
  • Downloaded 2,815 times
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    • Site-wide: 4,184
    • In developmental biology: 43
  • Year to date:
    • Site-wide: 10,309
  • Since beginning of last month:
    • Site-wide: 10,309

Single-cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

developmental biology more details view paper
  • Downloaded 2,731 times
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    • Site-wide: 4,373
    • In developmental biology: 45
  • Year to date:
    • Site-wide: 21,182
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    • Site-wide: 21,182

Tracking the embryonic stem cell transition from ground state pluripotency

developmental biology more details view paper
  • Downloaded 1,864 times
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    • Site-wide: 7,698
    • In developmental biology: 94
  • Year to date:
    • Site-wide: 18,941
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    • Site-wide: 18,941

Multi-omic rejuvenation of human cells by maturation phase transient reprogramming

molecular biology more details view paper
  • Downloaded 1,838 times
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    • Site-wide: 7,854
    • In molecular biology: 199
  • Year to date:
    • Site-wide: 257
  • Since beginning of last month:
    • Site-wide: 257

Establishment In Culture Of Expanded Potential Stem Cells

developmental biology more details view paper
  • Downloaded 1,701 times
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    • Site-wide: 8,855
    • In developmental biology: 121
  • Year to date:
    • Site-wide: 54,575
  • Since beginning of last month:
    • Site-wide: 54,575

Screening for genes that accelerate the epigenetic ageing clock in humans reveals a role for the H3K36 methyltransferase NSD1

genomics more details view paper
  • Downloaded 1,402 times
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    • Site-wide: 11,796
    • In genomics: 1,311
  • Year to date:
    • Site-wide: 96,997
  • Since beginning of last month:
    • Site-wide: 96,997

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

bioinformatics more details view paper
  • Downloaded 1,382 times
  • Download rankings, all-time:
    • Site-wide: 12,064
    • In bioinformatics: 1,489
  • Year to date:
    • Site-wide: 51,853
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    • Site-wide: 51,853

Epigenetic resetting of human pluripotency

developmental biology more details view paper
  • Downloaded 1,353 times
  • Download rankings, all-time:
    • Site-wide: 12,422
    • In developmental biology: 188
  • Year to date:
    • Site-wide: 68,524
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    • Site-wide: 68,524

A non-catalytic role of TET3 promotes open chromatin and enhances global transcription

developmental biology more details view paper
  • Downloaded 1,242 times
  • Download rankings, all-time:
    • Site-wide: 14,134
    • In developmental biology: 228
  • Year to date:
    • Site-wide: 37,792
  • Since beginning of last month:
    • Site-wide: 37,792

5-Formylcytosine controls nucleosome positioning through covalent histone-DNA interaction

genomics more details view paper
  • Downloaded 1,065 times
  • Download rankings, all-time:
    • Site-wide: 17,840
    • In genomics: 1,850
  • Year to date:
    • Site-wide: 97,584
  • Since beginning of last month:
    • Site-wide: 97,584

Genome-scale oscillations in DNA methylation during exit from pluripotency

genomics more details view paper
  • Downloaded 1,050 times
  • Download rankings, all-time:
    • Site-wide: 18,217
    • In genomics: 1,885
  • Year to date:
    • Site-wide: 111,802
  • Since beginning of last month:
    • Site-wide: 111,802

The non-canonical SMC protein SmcHD1 antagonises TAD formation on the inactive X chromosome

molecular biology more details view paper
  • Downloaded 1,037 times
  • Download rankings, all-time:
    • Site-wide: 18,580
    • In molecular biology: 510
  • Year to date:
    • Site-wide: 98,606
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    • Site-wide: 98,606

Dppa2 and Dppa4 directly regulate the Dux driven zygotic transcriptional programme

molecular biology more details view paper
  • Downloaded 969 times
  • Download rankings, all-time:
    • Site-wide: 20,474
    • In molecular biology: 552
  • Year to date:
    • Site-wide: 68,548
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    • Site-wide: 68,548

Enhancer-associated H3K4 methylation safeguards in vitro germlinecompetence

genomics more details view paper
  • Downloaded 863 times
  • Download rankings, all-time:
    • Site-wide: 24,218
    • In genomics: 2,349
  • Year to date:
    • Site-wide: 6,857
  • Since beginning of last month:
    • Site-wide: 6,857

Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in muscle stem cells

genomics more details view paper
  • Downloaded 830 times
  • Download rankings, all-time:
    • Site-wide: 25,569
    • In genomics: 2,438
  • Year to date:
    • Site-wide: 93,307
  • Since beginning of last month:
    • Site-wide: 93,307

Dppa2/4 target chromatin bivalency enabling multi-lineage commitment

molecular biology more details view paper
  • Downloaded 751 times
  • Download rankings, all-time:
    • Site-wide: 29,376
    • In molecular biology: 823
  • Year to date:
    • Site-wide: 56,794
  • Since beginning of last month:
    • Site-wide: 56,794

Multi-Tissue DNA Methylation Age Predictor In Mouse

genomics more details view paper
  • Downloaded 644 times
  • Download rankings, all-time:
    • Site-wide: 36,206
    • In genomics: 3,141
  • Year to date:
    • Site-wide: 83,463
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    • Site-wide: 83,463

DNA Methylation Repels Binding of HIF Transcription Factors to Maintain Tumour Immunotolerance

genomics more details view paper
  • Downloaded 630 times
  • Download rankings, all-time:
    • Site-wide: 37,221
    • In genomics: 3,197
  • Year to date:
    • Site-wide: 34,890
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    • Site-wide: 34,890

Conserved and divergent features of DNA methylation in embryonic stem cell-derived neurons

genomics more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 45,283
    • In genomics: 3,670
  • Year to date:
    • Site-wide: 28,493
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    • Site-wide: 28,493

Inference of emergent spatio-temporal processes from single-cell sequencing reveals feedback between de novo DNA methylation and chromatin condensates

genomics more details view paper
  • Downloaded 490 times
  • Download rankings, all-time:
    • Site-wide: 50,629
    • In genomics: 3,982
  • Year to date:
    • Site-wide: 1,208
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    • Site-wide: 1,208

Transcriptome and epigenome diversity and plasticity of muscle stem cells following transplantation

molecular biology more details view paper
  • Downloaded 392 times
  • Download rankings, all-time:
    • Site-wide: 64,045
    • In molecular biology: 1,871
  • Year to date:
    • Site-wide: 41,946
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    • Site-wide: 41,946

Genome wide efficiency profiling reveals modulation of maintenance and de novo methylation by Tets

genomics more details view paper
  • Downloaded 242 times
  • Download rankings, all-time:
    • Site-wide: 92,414
    • In genomics: 5,725
  • Year to date:
    • Site-wide: 57,633
  • Since beginning of last month:
    • Site-wide: 57,633

Histone modifications form a cell-type-specific chromosomal bar code that modulates and maintains patterns of gene expression through the cell cycle

genomics more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 104,474
    • In genomics: 6,096
  • Year to date:
    • Site-wide: 42,182
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    • Site-wide: 42,182

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