Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,319 bioRxiv papers from 242,658 authors.

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Preprints

The Human Cell Atlas

• Downloaded 11,515 times
• Download rankings, all-time:
  • Site-wide: 68 out of 52,319
  • In cell biology: 2 out of 2,465
• Year to date:
  • Site-wide: 4,649 out of 52,319
• Since beginning of last month:
  • Site-wide: 5,623 out of 52,319

Accurate prediction of single-cell DNA methylation states using deep learning

• Downloaded 5,703 times
• Download rankings, all-time:
  • Site-wide: 255 out of 52,319
  • In bioinformatics: 50 out of 5,482
• Year to date:
  • Site-wide: 11,588 out of 52,319
• Since beginning of last month:
  • Site-wide: 16,391 out of 52,319

SC3 - consensus clustering of single-cell RNA-Seq data

• Downloaded 4,613 times
• Download rankings, all-time:
  • Site-wide: 384 out of 52,319
  • In bioinformatics: 79 out of 5,482
• Year to date:
  • Site-wide: 6,028 out of 52,319
• Since beginning of last month:
  • Site-wide: 5,010 out of 52,319

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

• Downloaded 4,340 times
• Download rankings, all-time:
  • Site-wide: 433 out of 52,319
  • In genomics: 120 out of 3,745
• Year to date:
  • Site-wide: 6,912 out of 52,319
• Since beginning of last month:
  • Site-wide: 6,830 out of 52,319

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

• Downloaded 3,892 times
• Download rankings, all-time:
  • Site-wide: 547 out of 52,319
  • In developmental biology: 4 out of 1,532
• Year to date:
  • Site-wide: 46 out of 52,319
• Since beginning of last month:
  • Site-wide: 342 out of 52,319

Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

• Downloaded 2,444 times
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  • Site-wide: 1,281 out of 52,319
  • In genomics: 305 out of 3,745
• Year to date:
  • Site-wide: 5,090 out of 52,319
• Since beginning of last month:
  • Site-wide: 6,016 out of 52,319

Single-cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

• Downloaded 1,710 times
• Download rankings, all-time:
  • Site-wide: 2,398 out of 52,319
  • In developmental biology: 32 out of 1,532
• Year to date:
  • Site-wide: 2,277 out of 52,319
• Since beginning of last month:
  • Site-wide: 5,762 out of 52,319

Tracking the embryonic stem cell transition from ground state pluripotency

• Downloaded 1,427 times
• Download rankings, all-time:
  • Site-wide: 3,228 out of 52,319
  • In developmental biology: 47 out of 1,532
• Year to date:
  • Site-wide: 28,111 out of 52,319
• Since beginning of last month:
  • Site-wide: 28,919 out of 52,319

Establishment In Culture Of Expanded Potential Stem Cells

• Downloaded 1,351 times
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  • Site-wide: 3,544 out of 52,319
  • In developmental biology: 58 out of 1,532
• Year to date:
  • Site-wide: 27,988 out of 52,319
• Since beginning of last month:
  • Site-wide: 30,119 out of 52,319

Epigenetic resetting of human pluripotency

• Downloaded 1,090 times
• Download rankings, all-time:
  • Site-wide: 4,986 out of 52,319
  • In developmental biology: 88 out of 1,532
• Year to date:
  • Site-wide: 25,247 out of 52,319
• Since beginning of last month:
  • Site-wide: 20,953 out of 52,319

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

• Downloaded 1,043 times
• Download rankings, all-time:
  • Site-wide: 5,349 out of 52,319
  • In bioinformatics: 1,038 out of 5,482
• Year to date:
  • Site-wide: 8,573 out of 52,319
• Since beginning of last month:
  • Site-wide: 12,308 out of 52,319

5-Formylcytosine controls nucleosome positioning through covalent histone-DNA interaction

• Downloaded 889 times
• Download rankings, all-time:
  • Site-wide: 6,915 out of 52,319
  • In genomics: 1,120 out of 3,745
• Year to date:
  • Site-wide: 24,547 out of 52,319
• Since beginning of last month:
  • Site-wide: 25,590 out of 52,319

Genome-scale oscillations in DNA methylation during exit from pluripotency

• Downloaded 873 times
• Download rankings, all-time:
  • Site-wide: 7,114 out of 52,319
  • In genomics: 1,142 out of 3,745
• Year to date:
  • Site-wide: 23,560 out of 52,319
• Since beginning of last month:
  • Site-wide: 30,685 out of 52,319

A non-catalytic role of TET3 promotes open chromatin and enhances global transcription

• Downloaded 812 times
• Download rankings, all-time:
  • Site-wide: 7,941 out of 52,319
  • In developmental biology: 170 out of 1,532
• Year to date:
  • Site-wide: 14,903 out of 52,319
• Since beginning of last month:
  • Site-wide: 14,074 out of 52,319

The non-canonical SMC protein SmcHD1 antagonises TAD formation on the inactive X chromosome

• Downloaded 799 times
• Download rankings, all-time:
  • Site-wide: 8,150 out of 52,319
  • In molecular biology: 218 out of 1,577
• Year to date:
  • Site-wide: 24,044 out of 52,319
• Since beginning of last month:
  • Site-wide: 30,590 out of 52,319

Screening for genes that accelerate the epigenetic ageing clock in humans reveals a role for the H3K36 methyltransferase NSD1

• Downloaded 770 times
• Download rankings, all-time:
  • Site-wide: 8,600 out of 52,319
  • In genomics: 1,311 out of 3,745
• Year to date:
  • Site-wide: 1,050 out of 52,319
• Since beginning of last month:
  • Site-wide: 2,634 out of 52,319

Dppa2 and Dppa4 directly regulate the Dux driven zygotic transcriptional programme

• Downloaded 698 times
• Download rankings, all-time:
  • Site-wide: 9,909 out of 52,319
  • In molecular biology: 263 out of 1,577
• Year to date:
  • Site-wide: 9,521 out of 52,319
• Since beginning of last month:
  • Site-wide: 21,486 out of 52,319

Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in muscle stem cells

• Downloaded 511 times
• Download rankings, all-time:
  • Site-wide: 15,016 out of 52,319
  • In genomics: 1,924 out of 3,745
• Year to date:
  • Site-wide: 3,642 out of 52,319
• Since beginning of last month:
  • Site-wide: 16,504 out of 52,319

Multi-Tissue DNA Methylation Age Predictor In Mouse

• Downloaded 473 times
• Download rankings, all-time:
  • Site-wide: 16,490 out of 52,319
  • In genomics: 2,039 out of 3,745
• Year to date:
  • Site-wide: 47,046 out of 52,319
• Since beginning of last month:
  • Site-wide: 36,644 out of 52,319