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Author: Christopher E Mason

Rankings

  • All-time downloads: 85,926 (rank: 1,694 (tie) )
  • Categories:
    • bioinformatics: 3,691 (rank: 3,815 (tie) )
    • cancer biology: 750 (rank: 13,073 (tie) )
    • dermatology: 652 (rank: 117 (tie) )
    • epidemiology: 2,818 (rank: 4,559 (tie) )
    • genetics: 2,339 (rank: 8,462 )
    • genomics: 33,670 (rank: 351 )
    • immunology: 416 (rank: 22,983 (tie) )
    • infectious diseases: 2,330 (rank: 15,076 (tie) )
    • microbiology: 10,375 (rank: 1,529 )
    • molecular biology: 25,320 (rank: 31 )
    • oncology: 134 (rank: 5,110 (tie) )
    • public and global health: 664 (rank: 5,594 (tie) )
    • synthetic biology: 1,374 (rank: 1,387 (tie) )
    • systems biology: 1,393 (rank: 3,155 (tie) )

Downloads per author, site-wide

Preprints

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

molecular biology more details view paper
  • Downloaded 17,851 times
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    • Site-wide: 431
    • In molecular biology: 7
  • Year to date:
    • Site-wide: 1,589
  • Since beginning of last month:
    • Site-wide: 2,329

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 6,817 times
  • Download rankings, all-time:
    • Site-wide: 1,510
    • In genomics: 125
  • Year to date:
    • Site-wide: 4,261
  • Since beginning of last month:
    • Site-wide: 10,762

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 6,132 times
  • Download rankings, all-time:
    • Site-wide: 1,757
    • In genomics: 150
  • Year to date:
    • Site-wide: 5,335
  • Since beginning of last month:
    • Site-wide: 4,428

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

genomics more details view paper
  • Downloaded 5,463 times
  • Download rankings, all-time:
    • Site-wide: 2,044
    • In genomics: 186
  • Year to date:
    • Site-wide: 40,321
  • Since beginning of last month:
    • Site-wide: 22,114

Global Genetic Cartography of Urban Metagenomes andAnti-Microbial Resistance

microbiology more details view paper
  • Downloaded 5,347 times
  • Download rankings, all-time:
    • Site-wide: 2,114
    • In microbiology: 172
  • Year to date:
    • Site-wide: 2,488
  • Since beginning of last month:
    • Site-wide: 13,608

Accurate detection of m6A RNA modifications in native RNA sequences

molecular biology more details view paper
  • Downloaded 4,471 times
  • Download rankings, all-time:
    • Site-wide: 2,705
    • In molecular biology: 55
  • Year to date:
    • Site-wide: 63,768
  • Since beginning of last month:
    • Site-wide: 59,279

Nanopore detection of bacterial DNA base modifications

genomics more details view paper
  • Downloaded 3,127 times
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    • Site-wide: 4,514
    • In genomics: 476
  • Year to date:
    • Site-wide: 59,601
  • Since beginning of last month:
    • Site-wide: 84,953

Densely sampled viral trajectories for SARS-CoV-2 variants alpha (B.1.1.7) and epsilon (B.1.429)

epidemiology more details view paper
  • Downloaded 2,818 times
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    • Site-wide: 5,226
    • In epidemiology: 474
  • Year to date:
    • Site-wide: 741
  • Since beginning of last month:
    • Site-wide: 2,276

Multi-Platform Assessment of DNA Sequencing Performance using Human and Bacterial Reference Genomes in the ABRF Next-Generation Sequencing Study

genomics more details view paper
  • Downloaded 2,750 times
  • Download rankings, all-time:
    • Site-wide: 5,404
    • In genomics: 568
  • Year to date:
    • Site-wide: 7,143
  • Since beginning of last month:
    • Site-wide: 9,178

Limits in the detection of m6A changes using MeRIP/m6A-seq

bioinformatics more details view paper
  • Downloaded 2,162 times
  • Download rankings, all-time:
    • Site-wide: 7,709
    • In bioinformatics: 882
  • Year to date:
    • Site-wide: 37,748
  • Since beginning of last month:
    • Site-wide: 101,085

Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome

infectious diseases more details view paper
  • Downloaded 2,008 times
  • Download rankings, all-time:
    • Site-wide: 8,587
    • In infectious diseases: 1,236
  • Year to date:
    • Site-wide: 10,350
  • Since beginning of last month:
    • Site-wide: 6,904

Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers

genomics more details view paper
  • Downloaded 1,892 times
  • Download rankings, all-time:
    • Site-wide: 9,400
    • In genomics: 964
  • Year to date:
    • Site-wide: 117,839
  • Since beginning of last month:
    • Site-wide: 96,645

Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing

molecular biology more details view paper
  • Downloaded 1,793 times
  • Download rankings, all-time:
    • Site-wide: 10,167
    • In molecular biology: 263
  • Year to date:
    • Site-wide: 17,165
  • Since beginning of last month:
    • Site-wide: 28,033

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

microbiology more details view paper
  • Downloaded 1,706 times
  • Download rankings, all-time:
    • Site-wide: 10,938
    • In microbiology: 637
  • Year to date:
    • Site-wide: 60,318
  • Since beginning of last month:
    • Site-wide: 27,762

The Great Deceiver: miR-2392's Hidden Role in Driving SARS-CoV-2 Infection

systems biology more details view paper
  • Downloaded 1,393 times
  • Download rankings, all-time:
    • Site-wide: 14,769
    • In systems biology: 267
  • Year to date:
    • Site-wide: 1,846
  • Since beginning of last month:
    • Site-wide: 2,590

Engineering Radioprotective Human Cells Using the Tardigrade Damage Suppressor Protein, DSUP

synthetic biology more details view paper
  • Downloaded 1,374 times
  • Download rankings, all-time:
    • Site-wide: 15,080
    • In synthetic biology: 175
  • Year to date:
    • Site-wide: 4,384
  • Since beginning of last month:
    • Site-wide: 6,660

Towards a Comprehensive Variation Benchmark for Challenging Medically-Relevant Autosomal Genes

genomics more details view paper
  • Downloaded 1,254 times
  • Download rankings, all-time:
    • Site-wide: 17,285
    • In genomics: 1,702
  • Year to date:
    • Site-wide: 2,145
  • Since beginning of last month:
    • Site-wide: 664

Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

genomics more details view paper
  • Downloaded 1,211 times
  • Download rankings, all-time:
    • Site-wide: 18,215
    • In genomics: 1,781
  • Year to date:
    • Site-wide: 27,755
  • Since beginning of last month:
    • Site-wide: 86,945

Single-Cell, Human Sperm Transcriptomes and Variants from Fathers of Autistic and Healthy Children

genomics more details view paper
  • Downloaded 1,206 times
  • Download rankings, all-time:
    • Site-wide: 18,318
    • In genomics: 1,793
  • Year to date:
    • Site-wide: 35,085
  • Since beginning of last month:
    • Site-wide: 37,077

Ozone Treatment for Elimination of Bacteria and SARS-CoV-2 for Medical Environments

microbiology more details view paper
  • Downloaded 1,013 times
  • Download rankings, all-time:
    • Site-wide: 23,686
    • In microbiology: 1,404
  • Year to date:
    • Site-wide: 26,187
  • Since beginning of last month:
    • Site-wide: 17,043

The Microbe Directory v2.0: An Expanded Database of Ecological and Phenotypical Features of Microbes.

microbiology more details view paper
  • Downloaded 971 times
  • Download rankings, all-time:
    • Site-wide: 25,207
    • In microbiology: 1,478
  • Year to date:
    • Site-wide: 55,445
  • Since beginning of last month:
    • Site-wide: 86,602

Altered m6A modification of specific cellular transcripts affects Flaviviridae infection

molecular biology more details view paper
  • Downloaded 962 times
  • Download rankings, all-time:
    • Site-wide: 25,580
    • In molecular biology: 697
  • Year to date:
    • Site-wide: 62,747
  • Since beginning of last month:
    • Site-wide: 57,782

Haplotype Diversity and Sequence Heterogeneity of Human Telomeres

genomics more details view paper
  • Downloaded 959 times
  • Download rankings, all-time:
    • Site-wide: 25,706
    • In genomics: 2,379
  • Year to date:
    • Site-wide: 25,467
  • Since beginning of last month:
    • Site-wide: 22,593

The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification

genomics more details view paper
  • Downloaded 956 times
  • Download rankings, all-time:
    • Site-wide: 25,835
    • In genomics: 2,390
  • Year to date:
    • Site-wide: 4,355
  • Since beginning of last month:
    • Site-wide: 13,500

ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2

genetics more details view paper
  • Downloaded 941 times
  • Download rankings, all-time:
    • Site-wide: 26,382
    • In genetics: 1,216
  • Year to date:
    • Site-wide: 93,434
  • Since beginning of last month:
    • Site-wide: 111,581

Single-Cell RNA-Seq Reveals Novel Mitochondria-related Musculoskeletal Cell Populations during Adult Axolotl Limb Regeneration Process

genomics more details view paper
  • Downloaded 847 times
  • Download rankings, all-time:
    • Site-wide: 30,581
    • In genomics: 2,707
  • Year to date:
    • Site-wide: 29,066
  • Since beginning of last month:
    • Site-wide: 25,838

rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline

genetics more details view paper
  • Downloaded 825 times
  • Download rankings, all-time:
    • Site-wide: 31,693
    • In genetics: 1,475
  • Year to date:
    • Site-wide: 78,859
  • Since beginning of last month:
    • Site-wide: 65,927

Genomic DNA transposition induced by human PGBD5

genomics more details view paper
  • Downloaded 784 times
  • Download rankings, all-time:
    • Site-wide: 34,075
    • In genomics: 2,915
  • Year to date:
    • Site-wide: 96,840
  • Since beginning of last month:
    • Site-wide: 140,047

DNA methylation calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation

bioinformatics more details view paper
  • Downloaded 772 times
  • Download rankings, all-time:
    • Site-wide: 34,752
    • In bioinformatics: 3,808
  • Year to date:
    • Site-wide: 4,276
  • Since beginning of last month:
    • Site-wide: 1,675

Assessment of pharmacogenomic agreement

bioinformatics more details view paper
  • Downloaded 757 times
  • Download rankings, all-time:
    • Site-wide: 35,772
    • In bioinformatics: 3,906
  • Year to date:
    • Site-wide: 111,661
  • Since beginning of last month:
    • Site-wide: 147,149

End-to-End Protocol for the Detection of SARS-CoV-2 from Built Environments

public and global health more details view paper
  • Downloaded 664 times
  • Download rankings, all-time:
    • Site-wide: 42,606
    • In public and global health: 671
  • Year to date:
    • Site-wide: 33,454
  • Since beginning of last month:
    • Site-wide: 46,647

Obesity and Race Alter Gene Expression in Skin

dermatology more details view paper
  • Downloaded 652 times
  • Download rankings, all-time:
    • Site-wide: 43,691
    • In dermatology: 21
  • Year to date:
    • Site-wide: 21,448
  • Since beginning of last month:
    • Site-wide: 87,618

Mining the archives: a cross-platform analysis of gene expression profiles in archival formalin-fixed paraffin-embedded (FFPE) tissue

genetics more details view paper
  • Downloaded 573 times
  • Download rankings, all-time:
    • Site-wide: 51,427
    • In genetics: 2,293
  • Year to date:
    • Site-wide: 135,883
  • Since beginning of last month:
    • Site-wide: 112,178

Human PGBD5 DNA transposase promotes site-specific oncogenic mutations in rhabdoid tumors

cancer biology more details view paper
  • Downloaded 557 times
  • Download rankings, all-time:
    • Site-wide: 53,256
    • In cancer biology: 1,506
  • Year to date:
    • Site-wide: 114,389
  • Since beginning of last month:
    • Site-wide: 58,478

The microbiomes of seven lichen genera reveal host specificity, a reduced core community and potential as source of antimicrobials

microbiology more details view paper
  • Downloaded 552 times
  • Download rankings, all-time:
    • Site-wide: 53,857
    • In microbiology: 3,401
  • Year to date:
    • Site-wide: 53,352
  • Since beginning of last month:
    • Site-wide: 90,409

Holobiont Urbanism: sampling urban beehives reveals cities' metagenomes

microbiology more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 60,600
    • In microbiology: 3,912
  • Year to date:
    • Site-wide: 60,163
  • Since beginning of last month:
    • Site-wide: 88,503

Post-Transcriptional Regulation of Antiviral Gene Expression by N6-Methyladenosine

immunology more details view paper
  • Downloaded 416 times
  • Download rankings, all-time:
    • Site-wide: 73,250
    • In immunology: 2,170
  • Year to date:
    • Site-wide: 46,595
  • Since beginning of last month:
    • Site-wide: 33,982

SARS-CoV-2 genome diversity at the binding sites of oligonucleotides used for COVID-19 diagnosis

infectious diseases more details view paper
  • Downloaded 322 times
  • Download rankings, all-time:
    • Site-wide: 91,628
    • In infectious diseases: 4,045
  • Year to date:
    • Site-wide: 36,323
  • Since beginning of last month:
    • Site-wide: 39,182

Genetic Evidence for Selective Transfer of Microbes Between the International Space Station and an Astronaut

microbiology more details view paper
  • Downloaded 287 times
  • Download rankings, all-time:
    • Site-wide: 99,570
    • In microbiology: 7,122
  • Year to date:
    • Site-wide: 41,056
  • Since beginning of last month:
    • Site-wide: 70,550

Elevation of Gut-Derived p-Cresol Molecular Networks in Astronauts During Spaceflight Informs Drug Metabolism and Performance

molecular biology more details view paper
  • Downloaded 243 times
  • Download rankings, all-time:
    • Site-wide: 110,170
    • In molecular biology: 3,273
  • Year to date:
    • Site-wide: 41,964
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    • Site-wide: 70,601

Betacoronavirus-specific alternate splicing

genomics more details view paper
  • Downloaded 194 times
  • Download rankings, all-time:
    • Site-wide: 122,271
    • In genomics: 6,760
  • Year to date:
    • Site-wide: 29,657
  • Since beginning of last month:
    • Site-wide: 1,396

Deep oncopanel sequencing reveals fixation time- and within block position-dependent quality degradation in FFPE processed samples

cancer biology more details view paper
  • Downloaded 193 times
  • Download rankings, all-time:
    • Site-wide: 122,390
    • In cancer biology: 3,733
  • Year to date:
    • Site-wide: 29,918
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    • Site-wide: 24,986

Sex-specific transcriptional differences and loss of gene imprinting in pancreatic neuroendocrine tumors

oncology more details view paper
  • Downloaded 134 times
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    • Site-wide: 135,780
    • In oncology: 434
  • Year to date:
    • Site-wide: 45,283
  • Since beginning of last month:
    • Site-wide: 13,977

Systems Biology Analysis of Human Genomes Points to Key Pathways Conferring Spina Bifida Risk

genomics more details view paper
  • Downloaded 78 times
  • Download rankings, all-time:
    • Site-wide: 145,835
    • In genomics: 7,426
  • Year to date:
    • Site-wide: 74,343
  • Since beginning of last month:
    • Site-wide: 5,131

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