Author: Christopher Mason

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Preprints

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

• Downloaded 16,863 times
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  • Site-wide: 387
  • In molecular biology: 5
• Year to date:
  • Site-wide: 1,045
• Since beginning of last month:
  • Site-wide: 1,100

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

• Downloaded 6,188 times
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  • Site-wide: 1,376
  • In genomics: 132
• Year to date:
  • Site-wide: 7,275
• Since beginning of last month:
  • Site-wide: 5,193

A robust benchmark for germline structural variant detection

• Downloaded 5,670 times
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  • Site-wide: 1,577
  • In genomics: 149
• Year to date:
  • Site-wide: 4,592
• Since beginning of last month:
  • Site-wide: 4,141

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

• Downloaded 5,352 times
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  • Site-wide: 1,701
  • In genomics: 167
• Year to date:
  • Site-wide: 34,485
• Since beginning of last month:
  • Site-wide: 36,885

Global Genetic Cartography of Urban Metagenomes andAnti-Microbial Resistance

• Downloaded 4,452 times
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  • Site-wide: 2,202
  • In microbiology: 159
• Year to date:
  • Site-wide: 3,875
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  • Site-wide: 4,268

Accurate detection of m6A RNA modifications in native RNA sequences

• Downloaded 4,387 times
• Download rankings, all-time:
  • Site-wide: 2,239
  • In molecular biology: 45
• Year to date:
  • Site-wide: 99,581
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  • Site-wide: None

Nanopore detection of bacterial DNA base modifications

• Downloaded 3,043 times
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  • Site-wide: 3,788
  • In genomics: 442
• Year to date:
  • Site-wide: 72,813
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  • Site-wide: None

Multi-Platform Assessment of DNA Sequencing Performance using Human and Bacterial Reference Genomes in the ABRF Next-Generation Sequencing Study

• Downloaded 2,331 times
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  • Site-wide: 5,592
  • In genomics: 651
• Year to date:
  • Site-wide: 8,871
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  • Site-wide: None

Limits in the detection of m6A changes using MeRIP/m6A-seq

• Downloaded 2,045 times
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  • Site-wide: 6,737
  • In bioinformatics: 809
• Year to date:
  • Site-wide: 31,190
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  • Site-wide: 44,474

Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers

• Downloaded 1,870 times
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  • Site-wide: 7,693
  • In genomics: 855
• Year to date:
  • Site-wide: 72,855
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  • Site-wide: 54,030

Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome

• Downloaded 1,702 times
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  • Site-wide: 8,915
  • In infectious diseases: 1,087
• Year to date:
  • Site-wide: 9,650
• Since beginning of last month:
  • Site-wide: 9,218

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

• Downloaded 1,651 times
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  • Site-wide: 9,324
  • In microbiology: 520
• Year to date:
  • Site-wide: 29,046
• Since beginning of last month:
  • Site-wide: 29,784

Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing

• Downloaded 1,604 times
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  • Site-wide: 9,736
  • In molecular biology: 261
• Year to date:
  • Site-wide: 10,819
• Since beginning of last month:
  • Site-wide: 10,436

Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

• Downloaded 1,097 times
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  • Site-wide: 17,184
  • In genomics: 1,792
• Year to date:
  • Site-wide: 13,201
• Since beginning of last month:
  • Site-wide: 11,916

Single-Cell, Human Sperm Transcriptomes and Variants from Fathers of Autistic and Healthy Children

• Downloaded 1,094 times
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  • Site-wide: 17,243
  • In genomics: 1,802
• Year to date:
  • Site-wide: 22,735
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  • Site-wide: 26,492

ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2

• Downloaded 923 times
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  • Site-wide: 22,103
  • In genetics: 1,090
• Year to date:
  • Site-wide: 32,220
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  • Site-wide: 88,660

Altered m6A modification of specific cellular transcripts affects Flaviviridae infection

• Downloaded 896 times
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  • Site-wide: 23,056
  • In molecular biology: 635
• Year to date:
  • Site-wide: 43,444
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  • Site-wide: 36,820

The Microbe Directory v2.0: An Expanded Database of Ecological and Phenotypical Features of Microbes.

• Downloaded 887 times
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  • Site-wide: 23,419
  • In microbiology: 1,328
• Year to date:
  • Site-wide: 51,902
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  • Site-wide: 39,455

Ozone Treatment for Elimination of Bacteria and SARS-CoV-2 for Medical Environments

• Downloaded 852 times
• Download rankings, all-time:
  • Site-wide: 24,767
  • In microbiology: 1,424
• Year to date:
  • Site-wide: 23,296
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  • Site-wide: 21,401

Engineering Radioprotective Human Cells Using the Tardigrade Damage Suppressor Protein, DSUP

• Downloaded 813 times
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  • Site-wide: 26,465
  • In synthetic biology: 341
• Year to date:
  • Site-wide: 4,742
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  • Site-wide: None

Haplotype Diversity and Sequence Heterogeneity of Human Telomeres

• Downloaded 794 times
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  • Site-wide: 27,327
  • In genomics: 2,572
• Year to date:
  • Site-wide: 23,578
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  • Site-wide: 29,188

rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline

• Downloaded 773 times
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  • Site-wide: 28,367
  • In genetics: 1,414
• Year to date:
  • Site-wide: 61,014
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  • Site-wide: 53,844

Genomic DNA transposition induced by human PGBD5

• Downloaded 756 times
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  • Site-wide: 29,243
  • In genomics: 2,685
• Year to date:
  • Site-wide: 47,844
• Since beginning of last month:
  • Site-wide: 77,302

Assessment of pharmacogenomic agreement

• Downloaded 723 times
• Download rankings, all-time:
  • Site-wide: 31,163
  • In bioinformatics: 3,538
• Year to date:
  • Site-wide: 105,706
• Since beginning of last month:
  • Site-wide: 66,550

Single-Cell RNA-Seq Reveals Novel Mitochondria-related Musculoskeletal Cell Populations during Adult Axolotl Limb Regeneration Process

• Downloaded 691 times
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  • Site-wide: 33,132
  • In genomics: 2,947
• Year to date:
  • Site-wide: 31,246
• Since beginning of last month:
  • Site-wide: 23,136

Mining the archives: a cross-platform analysis of gene expression profiles in archival formalin-fixed paraffin-embedded (FFPE) tissue

• Downloaded 557 times
• Download rankings, all-time:
  • Site-wide: 43,747
  • In genetics: 2,105
• Year to date:
  • Site-wide: 96,691
• Since beginning of last month:
  • Site-wide: 80,136

End-to-End Protocol for the Detection of SARS-CoV-2 from Built Environments

• Downloaded 547 times
• Download rankings, all-time:
  • Site-wide: 44,758
  • In public and global health: 584
• Year to date:
  • Site-wide: 21,792
• Since beginning of last month:
  • Site-wide: 18,585

Human PGBD5 DNA transposase promotes site-specific oncogenic mutations in rhabdoid tumors

• Downloaded 522 times
• Download rankings, all-time:
  • Site-wide: 47,303
  • In cancer biology: 1,324
• Year to date:
  • Site-wide: 116,620
• Since beginning of last month:
  • Site-wide: None

Obesity and Race Alter Gene Expression in Skin

• Downloaded 483 times
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  • Site-wide: 51,732
  • In dermatology: 22
• Year to date:
  • Site-wide: 14,977
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  • Site-wide: 14,883

The microbiomes of seven lichen genera reveal host specificity, a reduced core community and potential as source of antimicrobials

• Downloaded 459 times
• Download rankings, all-time:
  • Site-wide: 54,676
  • In microbiology: 3,560
• Year to date:
  • Site-wide: 60,358
• Since beginning of last month:
  • Site-wide: 87,612

Holobiont Urbanism: sampling urban beehives reveals cities' metagenomes

• Downloaded 412 times
• Download rankings, all-time:
  • Site-wide: 61,206
  • In microbiology: 4,049
• Year to date:
  • Site-wide: 87,970
• Since beginning of last month:
  • Site-wide: 102,732

Post-Transcriptional Regulation of Antiviral Gene Expression by N6-Methyladenosine

• Downloaded 306 times
• Download rankings, all-time:
  • Site-wide: 79,365
  • In immunology: 2,157
• Year to date:
  • Site-wide: 59,031
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  • Site-wide: None

The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification

• Downloaded 289 times
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  • Site-wide: 82,851
  • In genomics: 5,370
• Year to date:
  • Site-wide: 12,509
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  • Site-wide: None

SARS-CoV-2 genome diversity at the binding sites of oligonucleotides used for COVID-19 diagnosis

• Downloaded 228 times
• Download rankings, all-time:
  • Site-wide: 95,743
  • In infectious diseases: 3,442
• Year to date:
  • Site-wide: 17,998
• Since beginning of last month:
  • Site-wide: 24,243

Genetic Evidence for Selective Transfer of Microbes Between the International Space Station and an Astronaut

• Downloaded 140 times
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  • Site-wide: 114,097
  • In microbiology: 8,626
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  • Site-wide: None
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  • Site-wide: None

Elevation of Gut-Derived p-Cresol Molecular Networks in Astronauts During Spaceflight Informs Drug Metabolism and Performance

• Downloaded 118 times
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  • Site-wide: 118,221
  • In molecular biology: 3,562
• Year to date:
  • Site-wide: 65,815
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  • Site-wide: None