Author: Sean M. Gibbons

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Preprints

Adaptive evolution within the gut microbiome of individual people

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Correcting for batch effects in case-control microbiome studies

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Blood metabolome signature predicts gut microbiome α-diversity in health and disease

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MICOM: metagenome-scale modeling to infer metabolic interactions in the gut microbiota

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Endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota

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Gut Microbiome Pattern Reflects Healthy Aging and Predicts Extended Survival in Humans

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Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort

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Industrialization is associated with elevated rates of horizontal gene transfer in the human microbiome

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Orthogonal dietary niche enables reversible engraftment of a gut bacterial commensal

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Non-responder phenotype reveals microbiome-wide antibiotic resistance in the murine gut

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Negative plant-microbiome feedback limits productivity in aquaponics

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