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Author: Rui Jiang

  • Most recently observed institution: Tsinghua University

Rankings

  • All-time downloads: 12,644 (rank: 19,865 )
  • Categories:
    • animal behavior and cognition: 150 (rank: 7,840 (tie) )
    • bioinformatics: 11,509 (rank: 851 )
    • biophysics: 656 (rank: 10,641 (tie) )
    • pathology: 329 (rank: 5,472 (tie) )

Downloads per author, site-wide

Preprints

DeepCAPE: a deep convolutional neural network for the accurate prediction of enhancers

bioinformatics more details view paper
  • Downloaded 1,289 times
  • Download rankings, all-time:
    • Site-wide: 19,382
    • In bioinformatics: 2,192
  • Year to date:
    • Site-wide: 95,312
  • Since beginning of last month:
    • Site-wide: 89,496

Simultaneous deep generative modeling and clustering of single cell genomic data

bioinformatics more details view paper
  • Downloaded 1,276 times
  • Download rankings, all-time:
    • Site-wide: 19,700
    • In bioinformatics: 2,233
  • Year to date:
    • Site-wide: 8,227
  • Since beginning of last month:
    • Site-wide: 21,138

SIP: An Interchangeable Pipeline for scRNA-seq Data Processing

bioinformatics more details view paper
  • Downloaded 1,000 times
  • Download rankings, all-time:
    • Site-wide: 28,446
    • In bioinformatics: 3,158
  • Year to date:
    • Site-wide: 85,702
  • Since beginning of last month:
    • Site-wide: 110,166

ProbAlign: a re-alignment method for long sequencing reads

bioinformatics more details view paper
  • Downloaded 878 times
  • Download rankings, all-time:
    • Site-wide: 34,427
    • In bioinformatics: 3,728
  • Year to date:
    • Site-wide: 116,447
  • Since beginning of last month:
    • Site-wide: 114,644

DeepCDR: a hybrid graph convolutional network for predicting cancer drug response

bioinformatics more details view paper
  • Downloaded 869 times
  • Download rankings, all-time:
    • Site-wide: 34,933
    • In bioinformatics: 3,778
  • Year to date:
    • Site-wide: 23,479
  • Since beginning of last month:
    • Site-wide: 39,135

DeepTACT: predicting high-resolution chromatin contacts via bootstrapping deep learning

bioinformatics more details view paper
  • Downloaded 803 times
  • Download rankings, all-time:
    • Site-wide: 39,192
    • In bioinformatics: 4,188
  • Year to date:
    • Site-wide: 127,959
  • Since beginning of last month:
    • Site-wide: 125,643

Integrating distal and proximal information to predict gene expression via a densely con-nected convolutional neural network

bioinformatics more details view paper
  • Downloaded 745 times
  • Download rankings, all-time:
    • Site-wide: 43,653
    • In bioinformatics: 4,570
  • Year to date:
    • Site-wide: 60,021
  • Since beginning of last month:
    • Site-wide: 29,897

Incorporating gene expression in genome-wide prediction of chromatin accessibility via deep learning

bioinformatics more details view paper
  • Downloaded 742 times
  • Download rankings, all-time:
    • Site-wide: 43,862
    • In bioinformatics: 4,593
  • Year to date:
    • Site-wide: 43,994
  • Since beginning of last month:
    • Site-wide: 34,030

Microtubule Binding Kinetics of Membrane-bound Kinesin Predicts High Motor Copy Numbers on Intracellular Cargo

biophysics more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 51,968
    • In biophysics: 1,698
  • Year to date:
    • Site-wide: 135,358
  • Since beginning of last month:
    • Site-wide: 155,671

OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions

bioinformatics more details view paper
  • Downloaded 640 times
  • Download rankings, all-time:
    • Site-wide: 53,790
    • In bioinformatics: 5,359
  • Year to date:
    • Site-wide: 44,066
  • Since beginning of last month:
    • Site-wide: 20,954

hECA: the cell-centric assembly of a cell atlas

bioinformatics more details view paper
  • Downloaded 632 times
  • Download rankings, all-time:
    • Site-wide: 54,700
    • In bioinformatics: 5,439
  • Year to date:
    • Site-wide: 10,976
  • Since beginning of last month:
    • Site-wide: 4,558

A reference-guided approach for epigenetic characterization of single cells

bioinformatics more details view paper
  • Downloaded 598 times
  • Download rankings, all-time:
    • Site-wide: 58,715
    • In bioinformatics: 5,773
  • Year to date:
    • Site-wide: 62,239
  • Since beginning of last month:
    • Site-wide: 68,325

VPAC: Variational projection for accurate clustering of single-cell transcriptomic data

bioinformatics more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 69,982
    • In bioinformatics: 6,607
  • Year to date:
    • Site-wide: 160,756
  • Since beginning of last month:
    • Site-wide: 158,717

stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics

bioinformatics more details view paper
  • Downloaded 444 times
  • Download rankings, all-time:
    • Site-wide: 82,904
    • In bioinformatics: 7,468
  • Year to date:
    • Site-wide: 18,936
  • Since beginning of last month:
    • Site-wide: 12,684

NeuronMotif: Deciphering transcriptional cis-regulatory codes from deep neural networks

bioinformatics more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 97,164
    • In bioinformatics: 8,394
  • Year to date:
    • Site-wide: 24,383
  • Since beginning of last month:
    • Site-wide: 8,681

StPOPA, encoding an anionic peroxidase in Solanum tuberosum, enhances resistance against Phytophthora infestans

pathology more details view paper
  • Downloaded 329 times
  • Download rankings, all-time:
    • Site-wide: 108,670
    • In pathology: 578
  • Year to date:
    • Site-wide: 139,229
  • Since beginning of last month:
    • Site-wide: 99,965

EnClaSC: A novel ensemble approach for accurate and robust cell-type classification of single-cell transcriptomes

bioinformatics more details view paper
  • Downloaded 303 times
  • Download rankings, all-time:
    • Site-wide: 115,332
    • In bioinformatics: 9,486
  • Year to date:
    • Site-wide: 160,355
  • Since beginning of last month:
    • Site-wide: 146,557

A General Framework for Representing and Annotating Multifaceted Cell Heterogeneity in Human Cell Atlas

bioinformatics more details view paper
  • Downloaded 234 times
  • Download rankings, all-time:
    • Site-wide: 133,467
    • In bioinformatics: 10,530
  • Year to date:
    • Site-wide: 47,195
  • Since beginning of last month:
    • Site-wide: 18,205

Determine independent gut microbiota-diseases association by eliminating the effects of human lifestyle factors

bioinformatics more details view paper
  • Downloaded 161 times
  • Download rankings, all-time:
    • Site-wide: 150,586
    • In bioinformatics: 11,468
  • Year to date:
    • Site-wide: 73,772
  • Since beginning of last month:
    • Site-wide: 66,610

Evaluation of different concentrations antibiotics on gut bacteria and growth of Ectropis obliquaProut (Lepidoptera: Geometridae)

animal behavior and cognition more details view paper
  • Downloaded 150 times
  • Download rankings, all-time:
    • Site-wide: 152,558
    • In animal behavior and cognition: 1,974
  • Year to date:
    • Site-wide: 79,276
  • Since beginning of last month:
    • Site-wide: 83,143

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