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Author: Yang Zhang

Rankings

  • All-time downloads: 108,952 (rank: 1,786 )
  • Categories:
    • biochemistry: 2,056 (rank: 2,946 (tie) )
    • bioengineering: 5,094 (rank: 353 )
    • bioinformatics: 21,301 (rank: 344 )
    • biophysics: 2,050 (rank: 3,068 (tie) )
    • cancer biology: 944 (rank: 13,320 (tie) )
    • cell biology: 548 (rank: 24,842 (tie) )
    • developmental biology: 641 (rank: 10,495 (tie) )
    • ecology: 254 (rank: 20,369 (tie) )
    • epidemiology: 845 (rank: 15,084 (tie) )
    • genomics: 5,444 (rank: 5,229 )
    • microbiology: 46,381 (rank: 382 )
    • molecular biology: 1,060 (rank: 7,720 (tie) )
    • neuroscience: 5,654 (rank: 4,416 (tie) )
    • plant biology: 1,114 (rank: 4,906 (tie) )
    • systems biology: 2,865 (rank: 1,797 )

Downloads per author, site-wide

Preprints

SARS-CoV-2 invades host cells via a novel route: CD147-spike protein

microbiology more details view paper
  • Downloaded 40,565 times
  • Download rankings, all-time:
    • Site-wide: 234
    • In microbiology: 22
  • Year to date:
    • Site-wide: 2,441
  • Since beginning of last month:
    • Site-wide: 5,956

CAT, AGTR2, L-SIGN and DC-SIGN are potential receptors for the entry of SARS-CoV-2 into human cells

bioinformatics more details view paper
  • Downloaded 6,192 times
  • Download rankings, all-time:
    • Site-wide: 2,429
    • In bioinformatics: 5,390
  • Year to date:
    • Site-wide: 210
  • Since beginning of last month:
    • Site-wide: 164

Protein structure and sequence re-analysis of 2019-nCoV genome does not indicate snakes as its intermediate host or the unique similarity between its spike protein insertions and HIV-1

bioinformatics more details view paper
  • Downloaded 5,538 times
  • Download rankings, all-time:
    • Site-wide: 2,834
    • In bioinformatics: 186
  • Year to date:
    • Site-wide: 38,569
  • Since beginning of last month:
    • Site-wide: 36,584

Multiversal SpaceTime (MSpaceTime) Not Neural Network as Source of Intelligence in Generalized Quantum Mechanics, Extended General Relativity, Darwin Dynamics for Artificial Super Intelligence Synthesis

neuroscience more details view paper
  • Downloaded 4,251 times
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    • Site-wide: 4,051
    • In neuroscience: 254
  • Year to date:
    • Site-wide: 53,691
  • Since beginning of last month:
    • Site-wide: 64,426

SARS-CoV-2 Infection Depends on Cellular Heparan Sulfate and ACE2

microbiology more details view paper
  • Downloaded 3,318 times
  • Download rankings, all-time:
    • Site-wide: 5,831
    • In microbiology: 361
  • Year to date:
    • Site-wide: 57,303
  • Since beginning of last month:
    • Site-wide: 56,875

Computational Design of Peptides to Block Binding of the SARS-CoV-2 Spike Protein to Human ACE2

bioinformatics more details view paper
  • Downloaded 2,878 times
  • Download rankings, all-time:
    • Site-wide: 7,163
    • In bioinformatics: 625
  • Year to date:
    • Site-wide: 120,996
  • Since beginning of last month:
    • Site-wide: 115,854

TSA-Seq Mapping of Nuclear Genome Organization

genomics more details view paper
  • Downloaded 2,827 times
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    • Site-wide: 7,337
    • In genomics: 648
  • Year to date:
    • Site-wide: 83,343
  • Since beginning of last month:
    • Site-wide: 70,789

Engineered ACE2 receptor traps potently neutralize SARS-CoV-2

bioengineering more details view paper
  • Downloaded 2,389 times
  • Download rankings, all-time:
    • Site-wide: 9,385
    • In bioengineering: 139
  • Year to date:
    • Site-wide: 53,280
  • Since beginning of last month:
    • Site-wide: 35,844

De Novo RNA Tertiary Structure Prediction at Atomic Resolution Using Geometric Potentials from Deep Learning

bioinformatics more details view paper
  • Downloaded 2,206 times
  • Download rankings, all-time:
    • Site-wide: 10,566
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 726
  • Since beginning of last month:
    • Site-wide: 185

Open-source personal pipetting robots with live-cell incubation and microscopy compatibility

bioengineering more details view paper
  • Downloaded 1,992 times
  • Download rankings, all-time:
    • Site-wide: 12,343
    • In bioengineering: 224
  • Year to date:
    • Site-wide: 15,998
  • Since beginning of last month:
    • Site-wide: 30,273

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

bioinformatics more details view paper
  • Downloaded 1,921 times
  • Download rankings, all-time:
    • Site-wide: 13,015
    • In bioinformatics: 1,482
  • Year to date:
    • Site-wide: 22,853
  • Since beginning of last month:
    • Site-wide: 42,312

Comparing 3D genome organization in multiple species using Phylo-HMRF

bioinformatics more details view paper
  • Downloaded 1,783 times
  • Download rankings, all-time:
    • Site-wide: 14,565
    • In bioinformatics: 1,410
  • Year to date:
    • Site-wide: 172,079
  • Since beginning of last month:
    • Site-wide: 175,808

Biophysical basis of cellular multi-specificity encoded in a model molecular switch

systems biology more details view paper
  • Downloaded 1,654 times
  • Download rankings, all-time:
    • Site-wide: 16,309
    • In systems biology: 299
  • Year to date:
    • Site-wide: 28,222
  • Since beginning of last month:
    • Site-wide: 10,888

TSA-Seq reveals a largely hardwired genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes

genomics more details view paper
  • Downloaded 1,535 times
  • Download rankings, all-time:
    • Site-wide: 18,344
    • In genomics: 1,601
  • Year to date:
    • Site-wide: 86,374
  • Since beginning of last month:
    • Site-wide: 138,857

SPIN reveals genome-wide landscape of nuclear compartmentalization

bioinformatics more details view paper
  • Downloaded 1,253 times
  • Download rankings, all-time:
    • Site-wide: 25,216
    • In bioinformatics: 2,704
  • Year to date:
    • Site-wide: 62,347
  • Since beginning of last month:
    • Site-wide: 49,310

Caenorhabditis elegans locomotion is affected by internalized paramagnetic nanoparticles in the presence of magnetic field

biophysics more details view paper
  • Downloaded 1,221 times
  • Download rankings, all-time:
    • Site-wide: 26,267
    • In biophysics: 693
  • Year to date:
    • Site-wide: 56,952
  • Since beginning of last month:
    • Site-wide: 50,595

Cryo-EM structure of the human Mixed Lineage Leukemia-1 complex bound to the nucleosome

biochemistry more details view paper
  • Downloaded 1,206 times
  • Download rankings, all-time:
    • Site-wide: 26,785
    • In biochemistry: 530
  • Year to date:
    • Site-wide: 180,711
  • Since beginning of last month:
    • Site-wide: 134,011

Modeling the functional relationship network at the splice isoform level through heterogeneous data integration

genomics more details view paper
  • Downloaded 1,189 times
  • Download rankings, all-time:
    • Site-wide: 27,308
    • In genomics: 2,157
  • Year to date:
    • Site-wide: 194,798
  • Since beginning of last month:
    • Site-wide: 178,731

Parallel natural selection in the cold-adapted crop-wild relative Tripsacum dactyloides and artificial selection in temperate adapted maize

plant biology more details view paper
  • Downloaded 1,131 times
  • Download rankings, all-time:
    • Site-wide: 29,575
    • In plant biology: 391
  • Year to date:
    • Site-wide: 159,436
  • Since beginning of last month:
    • Site-wide: 123,821

Optimized RNA-targeting CRISPR/Cas13d technology outperforms shRNA in identifying essential circRNAs

molecular biology more details view paper
  • Downloaded 1,113 times
  • Download rankings, all-time:
    • Site-wide: 30,291
    • In molecular biology: 744
  • Year to date:
    • Site-wide: 86,154
  • Since beginning of last month:
    • Site-wide: 54,275

Expanding the space of protein geometries by computational design of de novo fold families

bioengineering more details view paper
  • Downloaded 1,060 times
  • Download rankings, all-time:
    • Site-wide: 32,591
    • In bioengineering: 528
  • Year to date:
    • Site-wide: 143,682
  • Since beginning of last month:
    • Site-wide: 85,559

Predicting CTCF-mediated chromatin loops using CTCF-MP

bioinformatics more details view paper
  • Downloaded 1,057 times
  • Download rankings, all-time:
    • Site-wide: 32,733
    • In bioinformatics: 3,153
  • Year to date:
    • Site-wide: 191,197
  • Since beginning of last month:
    • Site-wide: 187,609

Effects of SARS-CoV-2 Mutations on Protein Structures and Intraviral Protein-Protein Interactions

microbiology more details view paper
  • Downloaded 1,037 times
  • Download rankings, all-time:
    • Site-wide: 33,705
    • In microbiology: 1,781
  • Year to date:
    • Site-wide: 136,582
  • Since beginning of last month:
    • Site-wide: 104,643

A Novel Transfer Learning Approach for Toxoplasma Gondii Microscopic Image Recognition by Fuzzy Cycle Generative Adversarial Network

bioinformatics more details view paper
  • Downloaded 1,019 times
  • Download rankings, all-time:
    • Site-wide: 34,599
    • In bioinformatics: 3,532
  • Year to date:
    • Site-wide: 84,605
  • Since beginning of last month:
    • Site-wide: 94,354

Potential transmission chains of variant B.1.1.7 and co-mutations of SARS-CoV-2

microbiology more details view paper
  • Downloaded 1,008 times
  • Download rankings, all-time:
    • Site-wide: 35,157
    • In microbiology: 1,851
  • Year to date:
    • Site-wide: 115,106
  • Since beginning of last month:
    • Site-wide: None

Mendelian Randomization Analysis Dissects the Relationship between NAFLD, T2D, and Obesity and Provides Implications to Precision Medicine

epidemiology more details view paper
  • Downloaded 869 times
  • Download rankings, all-time:
    • Site-wide: 43,951
    • In epidemiology: 2,085
  • Year to date:
    • Site-wide: 128,550
  • Since beginning of last month:
    • Site-wide: 109,860

MicroRNA-223 protects neurons from degeneration in Experimental Autoimmune Encephalomyelitis

neuroscience more details view paper
  • Downloaded 854 times
  • Download rankings, all-time:
    • Site-wide: 45,196
    • In neuroscience: 5,836
  • Year to date:
    • Site-wide: 68,131
  • Since beginning of last month:
    • Site-wide: 72,697

Evolution of a chordate-specific mechanism for myoblast fusion

developmental biology more details view paper
  • Downloaded 827 times
  • Download rankings, all-time:
    • Site-wide: 47,368
    • In developmental biology: 1,373
  • Year to date:
    • Site-wide: 19,412
  • Since beginning of last month:
    • Site-wide: 39,505

Multilayered N-glycoproteomics reveals impaired N-glycosylation promoting Alzheimer's disease

systems biology more details view paper
  • Downloaded 804 times
  • Download rankings, all-time:
    • Site-wide: 49,416
    • In systems biology: 942
  • Year to date:
    • Site-wide: 109,461
  • Since beginning of last month:
    • Site-wide: 50,544

Modulating the cellular context broadly reshapes the mutational landscape of a model enzyme

biophysics more details view paper
  • Downloaded 798 times
  • Download rankings, all-time:
    • Site-wide: 50,040
    • In biophysics: 1,427
  • Year to date:
    • Site-wide: 169,021
  • Since beginning of last month:
    • Site-wide: 152,903

Identifying zoonotic origin of SARS-CoV-2 by modeling the binding affinity between Spike receptor-binding domain and host ACE2

bioinformatics more details view paper
  • Downloaded 782 times
  • Download rankings, all-time:
    • Site-wide: 51,426
    • In bioinformatics: 4,767
  • Year to date:
    • Site-wide: 118,825
  • Since beginning of last month:
    • Site-wide: 137,239

Evolution of myoglobin in avian lineages: positive selection for aggregation resistance in penguins and high purifying selection in galliforms

bioinformatics more details view paper
  • Downloaded 774 times
  • Download rankings, all-time:
    • Site-wide: 52,196
    • In bioinformatics: 9,325
  • Year to date:
    • Site-wide: 8,345
  • Since beginning of last month:
    • Site-wide: 4,204

Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering

bioinformatics more details view paper
  • Downloaded 694 times
  • Download rankings, all-time:
    • Site-wide: 61,039
    • In bioinformatics: 5,540
  • Year to date:
    • Site-wide: 92,308
  • Since beginning of last month:
    • Site-wide: 113,587

A bacterial artificial chromosome (BAC)-vectored noninfectious replicon of SARS-CoV-2

microbiology more details view paper
  • Downloaded 668 times
  • Download rankings, all-time:
    • Site-wide: 64,314
    • In microbiology: 3,692
  • Year to date:
    • Site-wide: 106,069
  • Since beginning of last month:
    • Site-wide: 97,452

RainbowSTORM: An open-source ImageJ plugin for spectroscopic single-molecule localization microscopy (sSMLM) data analysis and image reconstruction

bioinformatics more details view paper
  • Downloaded 660 times
  • Download rankings, all-time:
    • Site-wide: 65,461
    • In bioinformatics: 5,983
  • Year to date:
    • Site-wide: 102,279
  • Since beginning of last month:
    • Site-wide: 135,194

Continuous-trait probabilistic model for comparing multi-species functional genomic data

bioinformatics more details view paper
  • Downloaded 649 times
  • Download rankings, all-time:
    • Site-wide: 66,869
    • In bioinformatics: 5,923
  • Year to date:
    • Site-wide: 145,501
  • Since beginning of last month:
    • Site-wide: 188,129

Functional Interrogation of HOXA9 Regulome in MLLr Leukemia via Reporter-based CRISPR/Cas9 screen

cancer biology more details view paper
  • Downloaded 647 times
  • Download rankings, all-time:
    • Site-wide: 67,161
    • In cancer biology: 1,721
  • Year to date:
    • Site-wide: 140,522
  • Since beginning of last month:
    • Site-wide: 166,285

Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps

bioinformatics more details view paper
  • Downloaded 613 times
  • Download rankings, all-time:
    • Site-wide: 72,194
    • In bioinformatics: 6,765
  • Year to date:
    • Site-wide: 64,832
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    • Site-wide: 137,483

TMEM16F phospholipid scramblase mediates trophoblast fusion and placental development

cell biology more details view paper
  • Downloaded 568 times
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    • Site-wide: 79,349
    • In cell biology: 3,137
  • Year to date:
    • Site-wide: 176,856
  • Since beginning of last month:
    • Site-wide: 158,598

PEPPI: Whole-proteome protein-protein interaction prediction through structure and sequence similarity, functional association, and machine learning

systems biology more details view paper
  • Downloaded 543 times
  • Download rankings, all-time:
    • Site-wide: 83,879
    • In systems biology: 2,168
  • Year to date:
    • Site-wide: 17,521
  • Since beginning of last month:
    • Site-wide: 121,291

RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control

neuroscience more details view paper
  • Downloaded 487 times
  • Download rankings, all-time:
    • Site-wide: 95,212
    • In neuroscience: 14,223
  • Year to date:
    • Site-wide: 62,651
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    • Site-wide: 79,177

Identification of a Novel Base J Binding Protein Complex Involved in RNA Polymerase II Transcription Termination in Trypanosomes

biochemistry more details view paper
  • Downloaded 487 times
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    • Site-wide: 95,159
    • In biochemistry: 2,419
  • Year to date:
    • Site-wide: 166,529
  • Since beginning of last month:
    • Site-wide: 156,835

Hepatitis C virus NS5A inhibitor daclatasvir allosterically impairs NS4B-involved protein-protein interactions within the viral replicase and disrupts the replicase quaternary structure in a replicase assembly surrogate system

microbiology more details view paper
  • Downloaded 431 times
  • Download rankings, all-time:
    • Site-wide: 108,064
    • In microbiology: 6,552
  • Year to date:
    • Site-wide: 176,440
  • Since beginning of last month:
    • Site-wide: 92,655

Deactivation and mislocalization of a kinase protein induced by a single amino acid mutation on the proton transport catalytic aspartic acid

biochemistry more details view paper
  • Downloaded 420 times
  • Download rankings, all-time:
    • Site-wide: 110,815
    • In biochemistry: 2,864
  • Year to date:
    • Site-wide: 171,279
  • Since beginning of last month:
    • Site-wide: 110,291

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks

bioinformatics more details view paper
  • Downloaded 416 times
  • Download rankings, all-time:
    • Site-wide: 111,788
    • In bioinformatics: 8,591
  • Year to date:
    • Site-wide: 173,097
  • Since beginning of last month:
    • Site-wide: 114,752

pGlycoQuant with a deep residual network for precise and minuscule-missing-value quantitative glycoproteomics enabling the functional exploration of site-specific glycosylation

systems biology more details view paper
  • Downloaded 413 times
  • Download rankings, all-time:
    • Site-wide: 112,700
    • In systems biology: 2,979
  • Year to date:
    • Site-wide: 25,187
  • Since beginning of last month:
    • Site-wide: 14,549

OGP: A Repository of Experimentally Characterized O-Glycoproteins to Facilitate Studies on O-Glycosylation

bioinformatics more details view paper
  • Downloaded 387 times
  • Download rankings, all-time:
    • Site-wide: 119,409
    • In bioinformatics: 9,093
  • Year to date:
    • Site-wide: 164,331
  • Since beginning of last month:
    • Site-wide: 135,375

Integrating multimeric threading with high-throughput experiments for structural interactome of Escherichia coli

bioinformatics more details view paper
  • Downloaded 383 times
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    • Site-wide: 120,281
    • In bioinformatics: 9,457
  • Year to date:
    • Site-wide: 98,473
  • Since beginning of last month:
    • Site-wide: 137,459

Multilayer network analysis of miRNA and protein expression profiles in breast cancer patients

bioinformatics more details view paper
  • Downloaded 382 times
  • Download rankings, all-time:
    • Site-wide: 120,626
    • In bioinformatics: 9,096
  • Year to date:
    • Site-wide: 188,105
  • Since beginning of last month:
    • Site-wide: 176,126

CRISPR/Cas12a mediated genome engineering in photosynthetic bacteria

microbiology more details view paper
  • Downloaded 347 times
  • Download rankings, all-time:
    • Site-wide: 130,352
    • In microbiology: 8,569
  • Year to date:
    • Site-wide: 127,006
  • Since beginning of last month:
    • Site-wide: 136,810

Screening and functional analysis of differentially expressed genes in an animal model of EBV-associated lymphomas

cancer biology more details view paper
  • Downloaded 339 times
  • Download rankings, all-time:
    • Site-wide: 132,696
    • In cancer biology: 3,649
  • Year to date:
    • Site-wide: 156,577
  • Since beginning of last month:
    • Site-wide: 124,883

US-align: Universal Structure Alignments of Proteins, Nucleic Acids, and Macromolecular Complexes

bioinformatics more details view paper
  • Downloaded 325 times
  • Download rankings, all-time:
    • Site-wide: 136,702
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 13,973
  • Since beginning of last month:
    • Site-wide: 21,472

MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction

bioinformatics more details view paper
  • Downloaded 317 times
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    • Site-wide: 139,273
    • In bioinformatics: 10,702
  • Year to date:
    • Site-wide: 103,966
  • Since beginning of last month:
    • Site-wide: 34,551

Decoding microbiome and protein family linkage to improve protein structure prediction

bioinformatics more details view paper
  • Downloaded 314 times
  • Download rankings, all-time:
    • Site-wide: 140,167
    • In bioinformatics: 10,837
  • Year to date:
    • Site-wide: 86,637
  • Since beginning of last month:
    • Site-wide: 121,035

Early-Stage Ocular Hypertension Alters Retinal Ganglion Cell Synaptic Transmission in the Visual Thalamus

neuroscience more details view paper
  • Downloaded 284 times
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    • Site-wide: 148,808
    • In neuroscience: 20,193
  • Year to date:
    • Site-wide: 187,478
  • Since beginning of last month:
    • Site-wide: 188,726

Gut Fungi Possess a Conserved Toxin Immunity Gene of Bacterial Origin

ecology more details view paper
  • Downloaded 280 times
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    • Site-wide: 150,074
    • In ecology: 4,394
  • Year to date:
    • Site-wide: 127,070
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    • Site-wide: 115,502

De Novo Protein Fold Design Through Sequence-Independent Fragment Assembly Simulations

bioinformatics more details view paper
  • Downloaded 181 times
  • Download rankings, all-time:
    • Site-wide: 176,389
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 34,281
  • Since beginning of last month:
    • Site-wide: 36,910

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

biophysics more details view paper
  • Downloaded 165 times
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    • Site-wide: 179,746
    • In biophysics: 6,464
  • Year to date:
    • Site-wide: 129,937
  • Since beginning of last month:
    • Site-wide: 70,530

Integrating Self-Attention Transformer with Triplet Neural Networks for Protein Gene Ontology Prediction

bioinformatics more details view paper
  • Downloaded 143 times
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    • Site-wide: 184,007
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 47,104
  • Since beginning of last month:
    • Site-wide: 2,743

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for High-Accuracy Gene Function Annotations

bioinformatics more details view paper
  • Downloaded 129 times
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    • Site-wide: 186,437
    • In bioinformatics: 12,799
  • Year to date:
    • Site-wide: 123,816
  • Since beginning of last month:
    • Site-wide: 169,773

MPDB: a unified multi-domain protein structure database integrating structural analogue detection

bioinformatics more details view paper
  • Downloaded 101 times
  • Download rankings, all-time:
    • Site-wide: 190,640
    • In bioinformatics: 12,931
  • Year to date:
    • Site-wide: 118,272
  • Since beginning of last month:
    • Site-wide: 146,964

Genome-wide analysis reveals PhoP regulates pathogenicity in Riemerella anatipestifer

pathology more details view paper
  • Downloaded 94 times
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    • Site-wide: 191,569
    • In pathology: None
  • Year to date:
    • Site-wide: 68,647
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    • Site-wide: 43,018

CircRNA-regulated immune response of Asian honey bee workers to microsporidian infection

pathology more details view paper
  • Downloaded 34 times
  • Download rankings, all-time:
    • Site-wide: 196,782
    • In pathology: None
  • Year to date:
    • Site-wide: 144,391
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    • Site-wide: 27,293

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