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Author: Yang Zhang

Rankings

  • All-time downloads: 93,654 (rank: 1,816 )
  • Categories:
    • biochemistry: 2,038 (rank: 2,644 )
    • bioengineering: 4,914 (rank: 335 )
    • bioinformatics: 20,579 (rank: 345 )
    • biophysics: 1,990 (rank: 2,738 )
    • cancer biology: 917 (rank: 12,601 (tie) )
    • cell biology: 542 (rank: 23,359 (tie) )
    • developmental biology: 513 (rank: 12,275 (tie) )
    • ecology: 237 (rank: 19,927 (tie) )
    • epidemiology: 828 (rank: 14,169 (tie) )
    • genomics: 5,373 (rank: 5,059 (tie) )
    • microbiology: 45,790 (rank: 332 )
    • molecular biology: 1,037 (rank: 7,302 (tie) )
    • neuroscience: 5,501 (rank: 4,149 (tie) )
    • plant biology: 1,101 (rank: 4,593 (tie) )
    • systems biology: 2,294 (rank: 2,095 )

Downloads per author, site-wide

Preprints

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for High-Accuracy Gene Function Annotations

bioinformatics more details view paper

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SARS-CoV-2 invades host cells via a novel route: CD147-spike protein

microbiology more details view paper
  • Downloaded 39,388 times
  • Download rankings, all-time:
    • Site-wide: 207
    • In microbiology: 20
  • Year to date:
    • Site-wide: 883
  • Since beginning of last month:
    • Site-wide: 2,247

Protein structure and sequence re-analysis of 2019-nCoV genome does not indicate snakes as its intermediate host or the unique similarity between its spike protein insertions and HIV-1

bioinformatics more details view paper
  • Downloaded 5,349 times
  • Download rankings, all-time:
    • Site-wide: 2,422
    • In bioinformatics: 178
  • Year to date:
    • Site-wide: 18,861
  • Since beginning of last month:
    • Site-wide: 52,642

Multiversal SpaceTime (MSpaceTime) Not Neural Network as Source of Intelligence in Generalized Quantum Mechanics, Extended General Relativity, Darwin Dynamics for Artificial Super Intelligence Synthesis

neuroscience more details view paper
  • Downloaded 4,117 times
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    • Site-wide: 3,485
    • In neuroscience: 234
  • Year to date:
    • Site-wide: 11,620
  • Since beginning of last month:
    • Site-wide: 16,366

SARS-CoV-2 Infection Depends on Cellular Heparan Sulfate and ACE2

microbiology more details view paper
  • Downloaded 3,149 times
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    • Site-wide: 5,112
    • In microbiology: 339
  • Year to date:
    • Site-wide: 12,398
  • Since beginning of last month:
    • Site-wide: 98,669

Computational Design of Peptides to Block Binding of the SARS-CoV-2 Spike Protein to Human ACE2

bioinformatics more details view paper
  • Downloaded 2,818 times
  • Download rankings, all-time:
    • Site-wide: 6,010
    • In bioinformatics: 602
  • Year to date:
    • Site-wide: 38,865
  • Since beginning of last month:
    • Site-wide: 72,067

TSA-Seq Mapping of Nuclear Genome Organization

genomics more details view paper
  • Downloaded 2,744 times
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    • Site-wide: 6,238
    • In genomics: 626
  • Year to date:
    • Site-wide: 102,133
  • Since beginning of last month:
    • Site-wide: 101,028

Engineered ACE2 receptor traps potently neutralize SARS-CoV-2

bioengineering more details view paper
  • Downloaded 2,242 times
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    • Site-wide: 8,425
    • In bioengineering: 134
  • Year to date:
    • Site-wide: 19,663
  • Since beginning of last month:
    • Site-wide: 70,814

Comparing 3D genome organization in multiple species using Phylo-HMRF

bioinformatics more details view paper
  • Downloaded 1,756 times
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    • Site-wide: 12,100
    • In bioinformatics: 1,347
  • Year to date:
    • Site-wide: 140,683
  • Since beginning of last month:
    • Site-wide: 160,014

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

bioinformatics more details view paper
  • Downloaded 1,671 times
  • Download rankings, all-time:
    • Site-wide: 13,025
    • In bioinformatics: 1,453
  • Year to date:
    • Site-wide: 53,177
  • Since beginning of last month:
    • Site-wide: 127,430

Open-source personal pipetting robots with live-cell incubation and microscopy compatibility

bioengineering more details view paper
  • Downloaded 1,652 times
  • Download rankings, all-time:
    • Site-wide: 13,244
    • In bioengineering: 220
  • Year to date:
    • Site-wide: 2,560
  • Since beginning of last month:
    • Site-wide: 17,301

TSA-Seq reveals a largely hardwired genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes

genomics more details view paper
  • Downloaded 1,457 times
  • Download rankings, all-time:
    • Site-wide: 16,142
    • In genomics: 1,562
  • Year to date:
    • Site-wide: 26,093
  • Since beginning of last month:
    • Site-wide: 34,011

Biophysical basis of cellular multi-specificity encoded in a model molecular switch

systems biology more details view paper
  • Downloaded 1,437 times
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    • Site-wide: 16,491
    • In systems biology: 288
  • Year to date:
    • Site-wide: 11,263
  • Since beginning of last month:
    • Site-wide: 8,917

Cryo-EM structure of the human Mixed Lineage Leukemia-1 complex bound to the nucleosome

biochemistry more details view paper
  • Downloaded 1,184 times
  • Download rankings, all-time:
    • Site-wide: 22,103
    • In biochemistry: 472
  • Year to date:
    • Site-wide: 94,610
  • Since beginning of last month:
    • Site-wide: 119,688

Modeling the functional relationship network at the splice isoform level through heterogeneous data integration

genomics more details view paper
  • Downloaded 1,172 times
  • Download rankings, all-time:
    • Site-wide: 22,428
    • In genomics: 2,081
  • Year to date:
    • Site-wide: 104,081
  • Since beginning of last month:
    • Site-wide: 116,807

SPIN reveals genome-wide landscape of nuclear compartmentalization

bioinformatics more details view paper
  • Downloaded 1,126 times
  • Download rankings, all-time:
    • Site-wide: 23,841
    • In bioinformatics: 2,673
  • Year to date:
    • Site-wide: 55,518
  • Since beginning of last month:
    • Site-wide: 55,359

Parallel natural selection in the cold-adapted crop-wild relative Tripsacum dactyloides and artificial selection in temperate adapted maize

plant biology more details view paper
  • Downloaded 1,101 times
  • Download rankings, all-time:
    • Site-wide: 24,698
    • In plant biology: 372
  • Year to date:
    • Site-wide: 120,383
  • Since beginning of last month:
    • Site-wide: 131,952

Caenorhabditis elegans locomotion is affected by internalized paramagnetic nanoparticles in the presence of magnetic field

biophysics more details view paper
  • Downloaded 1,096 times
  • Download rankings, all-time:
    • Site-wide: 24,830
    • In biophysics: 675
  • Year to date:
    • Site-wide: 28,539
  • Since beginning of last month:
    • Site-wide: 33,674

Optimized RNA-targeting CRISPR/Cas13d technology outperforms shRNA in identifying essential circRNAs

molecular biology more details view paper
  • Downloaded 1,037 times
  • Download rankings, all-time:
    • Site-wide: 27,033
    • In molecular biology: 720
  • Year to date:
    • Site-wide: 40,347
  • Since beginning of last month:
    • Site-wide: 92,356

Predicting CTCF-mediated chromatin loops using CTCF-MP

bioinformatics more details view paper
  • Downloaded 1,035 times
  • Download rankings, all-time:
    • Site-wide: 27,113
    • In bioinformatics: 3,005
  • Year to date:
    • Site-wide: 128,108
  • Since beginning of last month:
    • Site-wide: 73,860

Expanding the space of protein geometries by computational design of de novo fold families

bioengineering more details view paper
  • Downloaded 1,020 times
  • Download rankings, all-time:
    • Site-wide: 27,692
    • In bioengineering: 495
  • Year to date:
    • Site-wide: 62,878
  • Since beginning of last month:
    • Site-wide: 47,647

Effects of SARS-CoV-2 Mutations on Protein Structures and Intraviral Protein-Protein Interactions

microbiology more details view paper
  • Downloaded 987 times
  • Download rankings, all-time:
    • Site-wide: 29,043
    • In microbiology: 1,685
  • Year to date:
    • Site-wide: 26,531
  • Since beginning of last month:
    • Site-wide: 137,760

Potential transmission chains of variant B.1.1.7 and co-mutations of SARS-CoV-2

microbiology more details view paper
  • Downloaded 948 times
  • Download rankings, all-time:
    • Site-wide: 30,834
    • In microbiology: 1,799
  • Year to date:
    • Site-wide: 5,813
  • Since beginning of last month:
    • Site-wide: 45,456

A Novel Transfer Learning Approach for Toxoplasma Gondii Microscopic Image Recognition by Fuzzy Cycle Generative Adversarial Network

bioinformatics more details view paper
  • Downloaded 942 times
  • Download rankings, all-time:
    • Site-wide: 31,112
    • In bioinformatics: 3,414
  • Year to date:
    • Site-wide: 57,079
  • Since beginning of last month:
    • Site-wide: 48,731

Mendelian Randomization Analysis Dissects the Relationship between NAFLD, T2D, and Obesity and Provides Implications to Precision Medicine

epidemiology more details view paper
  • Downloaded 828 times
  • Download rankings, all-time:
    • Site-wide: 37,576
    • In epidemiology: 1,963
  • Year to date:
    • Site-wide: 80,569
  • Since beginning of last month:
    • Site-wide: 127,357

Modulating the cellular context broadly reshapes the mutational landscape of a model enzyme

biophysics more details view paper
  • Downloaded 771 times
  • Download rankings, all-time:
    • Site-wide: 41,588
    • In biophysics: 1,322
  • Year to date:
    • Site-wide: 99,258
  • Since beginning of last month:
    • Site-wide: 87,877

Multilayered N-glycoproteomics reveals impaired N-glycosylation promoting Alzheimer's disease

systems biology more details view paper
  • Downloaded 751 times
  • Download rankings, all-time:
    • Site-wide: 43,220
    • In systems biology: 915
  • Year to date:
    • Site-wide: 96,518
  • Since beginning of last month:
    • Site-wide: 95,855

MicroRNA-223 protects neurons from degeneration in Experimental Autoimmune Encephalomyelitis

neuroscience more details view paper
  • Downloaded 747 times
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    • Site-wide: 43,576
    • In neuroscience: 5,939
  • Year to date:
    • Site-wide: 57,031
  • Since beginning of last month:
    • Site-wide: 129,628

Identifying zoonotic origin of SARS-CoV-2 by modeling the binding affinity between Spike receptor-binding domain and host ACE2

bioinformatics more details view paper
  • Downloaded 729 times
  • Download rankings, all-time:
    • Site-wide: 45,083
    • In bioinformatics: 4,709
  • Year to date:
    • Site-wide: 33,907
  • Since beginning of last month:
    • Site-wide: 135,954

Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering

bioinformatics more details view paper
  • Downloaded 628 times
  • Download rankings, all-time:
    • Site-wide: 55,332
    • In bioinformatics: 5,500
  • Year to date:
    • Site-wide: 57,434
  • Since beginning of last month:
    • Site-wide: 60,527

CAT, AGTR2, L-SIGN and DC-SIGN are potential receptors for the entry of SARS-CoV-2 into human cells

bioinformatics more details view paper
  • Downloaded 627 times
  • Download rankings, all-time:
    • Site-wide: 55,466
    • In bioinformatics: 5,507
  • Year to date:
    • Site-wide: 11,199
  • Since beginning of last month:
    • Site-wide: 46,102

Continuous-trait probabilistic model for comparing multi-species functional genomic data

bioinformatics more details view paper
  • Downloaded 614 times
  • Download rankings, all-time:
    • Site-wide: 56,992
    • In bioinformatics: 5,642
  • Year to date:
    • Site-wide: 151,074
  • Since beginning of last month:
    • Site-wide: 144,003

Functional Interrogation of HOXA9 Regulome in MLLr Leukemia via Reporter-based CRISPR/Cas9 screen

cancer biology more details view paper
  • Downloaded 610 times
  • Download rankings, all-time:
    • Site-wide: 57,516
    • In cancer biology: 1,651
  • Year to date:
    • Site-wide: 65,260
  • Since beginning of last month:
    • Site-wide: 39,269

A bacterial artificial chromosome (BAC)-vectored noninfectious replicon of SARS-CoV-2

microbiology more details view paper
  • Downloaded 609 times
  • Download rankings, all-time:
    • Site-wide: 57,532
    • In microbiology: 3,584
  • Year to date:
    • Site-wide: 56,330
  • Since beginning of last month:
    • Site-wide: 45,173

RainbowSTORM: An open-source ImageJ plugin for spectroscopic single-molecule localization microscopy (sSMLM) data analysis and image reconstruction

bioinformatics more details view paper
  • Downloaded 594 times
  • Download rankings, all-time:
    • Site-wide: 59,344
    • In bioinformatics: 5,823
  • Year to date:
    • Site-wide: 37,629
  • Since beginning of last month:
    • Site-wide: 24,238

TMEM16F phospholipid scramblase mediates trophoblast fusion and placental development

cell biology more details view paper
  • Downloaded 542 times
  • Download rankings, all-time:
    • Site-wide: 66,470
    • In cell biology: 2,947
  • Year to date:
    • Site-wide: 139,036
  • Since beginning of last month:
    • Site-wide: 144,097

Evolution of a chordate-specific mechanism for myoblast fusion

developmental biology more details view paper
  • Downloaded 513 times
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    • Site-wide: 70,991
    • In developmental biology: 1,792
  • Year to date:
    • Site-wide: 15,230
  • Since beginning of last month:
    • Site-wide: 12,962

Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps

bioinformatics more details view paper
  • Downloaded 511 times
  • Download rankings, all-time:
    • Site-wide: 71,303
    • In bioinformatics: 6,693
  • Year to date:
    • Site-wide: 58,497
  • Since beginning of last month:
    • Site-wide: 60,438

Identification of a Novel Base J Binding Protein Complex Involved in RNA Polymerase II Transcription Termination in Trypanosomes

biochemistry more details view paper
  • Downloaded 461 times
  • Download rankings, all-time:
    • Site-wide: 79,813
    • In biochemistry: 2,231
  • Year to date:
    • Site-wide: 148,367
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    • Site-wide: 146,512

Hepatitis C virus NS5A inhibitor daclatasvir allosterically impairs NS4B-involved protein-protein interactions within the viral replicase and disrupts the replicase quaternary structure in a replicase assembly surrogate system

microbiology more details view paper
  • Downloaded 405 times
  • Download rankings, all-time:
    • Site-wide: 91,068
    • In microbiology: 6,181
  • Year to date:
    • Site-wide: 98,741
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    • Site-wide: 54,350

Deactivation and mislocalization of a kinase protein induced by a single amino acid mutation on the proton transport catalytic aspartic acid

biochemistry more details view paper
  • Downloaded 393 times
  • Download rankings, all-time:
    • Site-wide: 93,734
    • In biochemistry: 2,693
  • Year to date:
    • Site-wide: 138,159
  • Since beginning of last month:
    • Site-wide: 126,576

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks

bioinformatics more details view paper
  • Downloaded 392 times
  • Download rankings, all-time:
    • Site-wide: 93,979
    • In bioinformatics: 8,206
  • Year to date:
    • Site-wide: 55,408
  • Since beginning of last month:
    • Site-wide: 122,200

RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control

neuroscience more details view paper
  • Downloaded 375 times
  • Download rankings, all-time:
    • Site-wide: 97,894
    • In neuroscience: 14,544
  • Year to date:
    • Site-wide: 24,786
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    • Site-wide: 16,802

Multilayer network analysis of miRNA and protein expression profiles in breast cancer patients

bioinformatics more details view paper
  • Downloaded 358 times
  • Download rankings, all-time:
    • Site-wide: 101,693
    • In bioinformatics: 8,687
  • Year to date:
    • Site-wide: 151,195
  • Since beginning of last month:
    • Site-wide: 148,912

OGP: A Repository of Experimentally Characterized O-Glycoproteins to Facilitate Studies on O-Glycosylation

bioinformatics more details view paper
  • Downloaded 356 times
  • Download rankings, all-time:
    • Site-wide: 102,297
    • In bioinformatics: 8,726
  • Year to date:
    • Site-wide: 117,045
  • Since beginning of last month:
    • Site-wide: 113,445

Integrating multimeric threading with high-throughput experiments for structural interactome of Escherichia coli

bioinformatics more details view paper
  • Downloaded 316 times
  • Download rankings, all-time:
    • Site-wide: 112,273
    • In bioinformatics: 9,299
  • Year to date:
    • Site-wide: 91,135
  • Since beginning of last month:
    • Site-wide: 103,808

Screening and functional analysis of differentially expressed genes in an animal model of EBV-associated lymphomas

cancer biology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 114,428
    • In cancer biology: 3,472
  • Year to date:
    • Site-wide: 139,863
  • Since beginning of last month:
    • Site-wide: 120,229

CRISPR/Cas12a mediated genome engineering in photosynthetic bacteria

microbiology more details view paper
  • Downloaded 304 times
  • Download rankings, all-time:
    • Site-wide: 115,289
    • In microbiology: 8,188
  • Year to date:
    • Site-wide: 82,921
  • Since beginning of last month:
    • Site-wide: 87,106

Computational analysis of vertebrate myoglobins reveals aggregation resistance in aquatic birds and higher surface hydrophobicity in fish

bioinformatics more details view paper
  • Downloaded 276 times
  • Download rankings, all-time:
    • Site-wide: 122,817
    • In bioinformatics: 9,920
  • Year to date:
    • Site-wide: 38,435
  • Since beginning of last month:
    • Site-wide: 104,883

Early-Stage Ocular Hypertension Alters Retinal Ganglion Cell Synaptic Transmission in the Visual Thalamus

neuroscience more details view paper
  • Downloaded 262 times
  • Download rankings, all-time:
    • Site-wide: 126,311
    • In neuroscience: 19,012
  • Year to date:
    • Site-wide: 162,143
  • Since beginning of last month:
    • Site-wide: 158,410

MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction

bioinformatics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 128,440
    • In bioinformatics: 10,263
  • Year to date:
    • Site-wide: 42,787
  • Since beginning of last month:
    • Site-wide: 99,388

Gut Fungi Possess a Conserved Toxin Immunity Gene of Bacterial Origin

ecology more details view paper
  • Downloaded 237 times
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    • Site-wide: 132,869
    • In ecology: 4,351
  • Year to date:
    • Site-wide: 113,255
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    • Site-wide: 93,336

Decoding microbiome and protein family linkage to improve protein structure prediction

bioinformatics more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 145,482
    • In bioinformatics: 11,190
  • Year to date:
    • Site-wide: 63,210
  • Since beginning of last month:
    • Site-wide: 39,803

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

biophysics more details view paper
  • Downloaded 123 times
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    • Site-wide: 157,114
    • In biophysics: 6,038
  • Year to date:
    • Site-wide: 96,696
  • Since beginning of last month:
    • Site-wide: 150,921

pGlycoQuant with a deep residual network for precise and minuscule-missing-value quantitative glycoproteomics enabling the functional exploration of site-specific glycosylation

systems biology more details view paper
  • Downloaded 106 times
  • Download rankings, all-time:
    • Site-wide: 159,242
    • In systems biology: 3,257
  • Year to date:
    • Site-wide: 109,300
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    • Site-wide: 14,896

MPDB: a unified multi-domain protein structure database integrating structural analogue detection

bioinformatics more details view paper
  • Downloaded 41 times
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    • Site-wide: 164,314
    • In bioinformatics: 12,230
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